Jatropha Genome Database

JcCA0270701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0270701.10 + phase: 2 /pseudo/partial
         (616 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29651.m000291 succinate dehydrogenase, putative                       569   e-162

>29651.m000291 succinate dehydrogenase, putative
          Length = 1869

 Score =  569 bits (287), Expect = e-162
 Identities = 416/459 (90%)
 Strand = Plus / Plus

                                                                        
Query: 152  atggaaagatacgctcctacagccaaggatcttgcttcaagagatgttgtttcaagatct 211
            |||||||| || ||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct: 910  atggaaaggtatgctcctacagcaaaagatcttgcatcaagggatgttgtttcaagatct 969

                                                                        
Query: 212  atgaccatggaaattcgggagggtcgtggagtaggacctttgaaggatcatatctatttg 271
            ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct: 970  atgaccatggagattcgggagggtcgtggtgtaggacctttgaaggatcatatctatctg 1029

                                                                        
Query: 272  cacttaaatcacttgcccccagatgtgctaaaagagaggcttcccggtatctctgaaact 331
            |||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||
Sbjct: 1030 cacttaaatcacttgcccccagatgtactgaaagagaggcttcctggtatttctgaaact 1089

                                                                        
Query: 332  gctgctatttttgctggtgtggatgttacaaaggaacccattcctgttttacctactgtg 391
            || || |||||||||||||| |||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1090 gcagccatttttgctggtgttgatgttacgaaggaacctatccctgtgttacctactgtg 1149

                                                                        
Query: 392  cattataatatgggaggaattcccacaaattaccatggagaggtagttactgttaaaggc 451
            ||||| |||||||| ||||| ||||||||||||||||||||||| || || |||||||| 
Sbjct: 1150 cattacaatatgggtggaatccccacaaattaccatggagaggtggtaacagttaaagga 1209

                                                                        
Query: 452  aatgatcctgatgctgttgttcctggactgatggctgctggagaggcagcctgtgcatca 511
            || ||||||||| |||| ||||||||||| |||||||| || ||||| ||||||||||||
Sbjct: 1210 aacgatcctgattctgtagttcctggactaatggctgcaggggaggccgcctgtgcatca 1269

                                                                        
Query: 512  gttcatggtgccaatcgtcttggtgcaaattctctgcttgacattgttgtttttgggcga 571
            ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || 
Sbjct: 1270 gttcatggtgccaatcggcttggtgcaaattctctgcttgacattgtggtttttggtcgt 1329

                                                   
Query: 572  gcttgtgcaaacagagtggcagagatcaatagaccaggt 610
            ||||||||||| |||||||| |||||  | |||||||||
Sbjct: 1330 gcttgtgcaaatagagtggcggagattcaaagaccaggt 1368



 Score = 56.0 bits (28), Expect = 3e-07
 Identities = 59/68 (86%), Gaps = 1/68 (1%)
 Strand = Plus / Plus

                                                                       
Query: 84  caggatcttgagtttgtttcaatttcatcctacaggcatttatggggctggctgcctaat 143
           |||||||| || |||||| || ||||||||||||||||| ||||| ||||| || |||||
Sbjct: 793 caggatctggaatttgtt-cagtttcatcctacaggcatatatggagctggttgtctaat 851

                   
Query: 144 tacagaag 151
           ||| ||||
Sbjct: 852 tactgaag 859