Jatropha Genome Database
- JcCA0270361.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0270361.10 + phase: 2 /partial
(691 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29999.m000208 DNA binding protein, putative 285 2e-76
29585.m000610 DNA binding protein, putative 56 3e-07
>29999.m000208 DNA binding protein, putative
Length = 2571
Score = 285 bits (144), Expect = 2e-76
Identities = 399/484 (82%)
Strand = Plus / Plus
Query: 180 cagaaatgcttgaaaatacagataggtatttctgtgctcctaatatggaattgaagatgt 239
||||||||| ||||| | |||||| |||||||||||||| || ||||| ||||||||||
Sbjct: 560 cagaaatgcctgaaactggagatagatatttctgtgctcccaacatggagttgaagatgt 619
Query: 240 ctaagaaggttgttccaaacaattaccctacaaatgtcaaaaagttgttatcaaccggca 299
||||||||||| |||| || | || |||| |||||||||| || ||||||||||| || |
Sbjct: 620 ctaagaaggttcttcccaatactttcccttcaaatgtcaagaaattgttatcaacaggta 679
Query: 300 tacttgatggagctcgggtgaaatatctttctccggggagagagctctatggaattatag 359
|||||||||||||||||||||| ||| | |||||| | ||||| | |||||||||||||
Sbjct: 680 tacttgatggagctcgggtgaagtatatctctccgcagcgagagttatatggaattatag 739
Query: 360 aaggtggtggatacttgtgtggctgctcattgtgcaatttctcaaaagtcctcagtgcac 419
| ||||||||||||||||||||||| ||| ||| |||||||| | ||| || | |||
Sbjct: 740 acggtggtggatacttgtgtggctgtccatcgtgtaatttctcgagagttctgactgcct 799
Query: 420 atgagtttgagaagcatgctggcagtagaactaggcatccaaacaatcacatacacttag 479
||||||||||| ||||||||| || |||||| || || |||||||||||| || | |
Sbjct: 800 atgagtttgagctgcatgctggtgctaaaactagacacccgaacaatcacatatacctgg 859
Query: 480 agaacgggaaaccaatctgcagcattattcaggagctaaaaactgctccacttagtgcat 539
|||| ||||||||||| || |||||||||||||| |||||| | || || ||| | ||
Sbjct: 860 agaatgggaaaccaatttgtagcattattcaggaactaaaagcagcaccgcttggcgctg 919
Query: 540 tgggtgaagtgataaaagatgttgcaggttcatccatcaatggggagttatttgagattt 599
||| ||||||||||||||| | || ||||||||||| |||| |||||| || || |||
Sbjct: 920 tggatgaagtgataaaagacgcggccggttcatccataaatgaggagttcttccaggttt 979
Query: 600 ggaaagctagtttccagcaacgaaatggaatggctggagcagatagaaaatgttacagca 659
||||||||||| | || ||| | |||||||| ||| |||||| |||||||||||||
Sbjct: 980 ggaaagctagtcttcatcaatgcaatggaataattggggcagatgagaaatgttacagca 1039
Query: 660 tgct 663
||||
Sbjct: 1040 tgct 1043
Score = 109 bits (55), Expect = 2e-23
Identities = 73/79 (92%)
Strand = Plus / Plus
Query: 5 gagattcctaagcatgctagttcatctggaattaggaagattacgttcaagtttagcaaa 64
||||||||||||||||||||| || |||||||||| |||||||| || ||||||||||||
Sbjct: 418 gagattcctaagcatgctagtacaactggaattagaaagattacttttaagtttagcaaa 477
Query: 65 agaaaagaggactatgata 83
||||||||||| |||||||
Sbjct: 478 agaaaagaggattatgata 496
>29585.m000610 DNA binding protein, putative
Length = 1479
Score = 56.0 bits (28), Expect = 3e-07
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 239 tctaagaaggttgttccaaacaattaccctacaaatgtcaaaaagttgttatcaaccggc 298
||||||||||| | |||||||| | ||| |||||||||||| ||||||||||| |||
Sbjct: 1036 tctaagaaggtcgccccaaacaactttccttcaaatgtcaaaagtttgttatcaacgggc 1095
Query: 299 atacttgatggagctcgggtgaaatatctttc 330
|| |||||||| | || ||||||||| ||||
Sbjct: 1096 atgcttgatggggttcctgtgaaatatatttc 1127