Jatropha Genome Database
- JcCA0270011.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0270011.10 - phase: 1 /pseudo/partial
(818 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30174.m009082 LIGULELESS1 protein, putative 232 3e-60
30138.m003942 LIGULELESS1 protein, putative 68 9e-11
>30174.m009082 LIGULELESS1 protein, putative
Length = 1539
Score = 232 bits (117), Expect = 3e-60
Identities = 192/217 (88%)
Strand = Plus / Plus
Query: 252 aaatcctttctccgtctacatggcaatgggatccaaaacacttctggaatttgtccttca 311
||||||||||||| |||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct: 958 aaatcctttctccatctacatggcaatgggatccaaaacacttctggaatctctccacca 1017
Query: 312 gcaactgatgagttcactcgtcttaatactgcatcaactgttcatgagttagccggggtg 371
|||| ||| || |||||| | ||| | | |||||| | |||||||||| || ||||||
Sbjct: 1018 gcaagtgaagacttcactgtttttagtgcatcatcaaatattcatgagttggctggggtg 1077
Query: 372 tcacattccagttgtgctctctctcttctgtcagctgaatcacaggacttaagtcattca 431
|| |||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct: 1078 tcgcattccagttgtgctctctctcttctgtcagccgaatcacaggacttgagccattca 1137
Query: 432 gcaggaattataatggcaaggccctcgatcagtcaag 468
||||||||||||||||| ||||||| |||||||||||
Sbjct: 1138 gcaggaattataatggctaggcccttgatcagtcaag 1174
Score = 147 bits (74), Expect = 1e-34
Identities = 124/140 (88%), Gaps = 3/140 (2%)
Strand = Plus / Plus
Query: 4 caggtttcatttgcttgttgaattcgacgatggtaagcgcagttgtcgtaaacgcctagc 63
||||||||||||| | ||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct: 651 caggtttcatttgttggttgagttcgatgatggtaagcgtagttgtcgtaaacgtctagc 710
Query: 64 tgggcacaatgaacggcgaaggaagcctcagtttggtgctctctctggtag---acataa 120
|| ||||||||||| ||||||||||||| |||||||||||||||||||| ||| ||
Sbjct: 711 aggccacaatgaacgtagaaggaagcctcaatttggtgctctctctggtaggccacacaa 770
Query: 121 gttactgcagtcatatcaag 140
|||||||||| |||||||||
Sbjct: 771 gttactgcaggcatatcaag 790
Score = 103 bits (52), Expect = 2e-21
Identities = 115/136 (84%)
Strand = Plus / Plus
Query: 683 ttctgatgaaaatggatctactgtagatttgcttcaactttcatcacatcttcatagggt 742
||||| |||||||||| |||| || |||||||||||||| ||||||||||||||||||||
Sbjct: 1401 ttctgctgaaaatggaactacggtggatttgcttcaactgtcatcacatcttcatagggt 1460
Query: 743 cgagcaacagaggaattctgcacaagtgaagcatgaagttgaggatttttccagttttct 802
|| |||||||| || || ||||||||||||||| | ||||| | ||| ||||| ||
Sbjct: 1461 ggaacaacagagaaactccatgcaagtgaagcatgaattagaggagtgttcaagtttcct 1520
Query: 803 taccacatatggggca 818
| |||| |||||||||
Sbjct: 1521 tgccacctatggggca 1536
>30138.m003942 LIGULELESS1 protein, putative
Length = 1674
Score = 67.9 bits (34), Expect = 9e-11
Identities = 88/106 (83%)
Strand = Plus / Plus
Query: 6 ggtttcatttgcttgttgaattcgacgatggtaagcgcagttgtcgtaaacgcctagctg 65
|||||||||| || | |||||| || ||||| ||||| || |||||||||||||| || |
Sbjct: 665 ggtttcatttactggctgaatttgatgatggcaagcgaagctgtcgtaaacgccttgcag 724
Query: 66 ggcacaatgaacggcgaaggaagcctcagtttggtgctctctctgg 111
| ||||||||||| || ||||| ||||| ||||| ||| ||||||
Sbjct: 725 gccacaatgaacgtcggaggaaacctcaagttggtcctcactctgg 770