Jatropha Genome Database
- JcCA0269921.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0269921.10 - phase: 2 /pseudo/partial
(1129 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticul... 567 e-161
28176.m000273 Omega-3 fatty acid desaturase, chloroplast precurs... 159 4e-38
29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor 143 3e-33
>29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticulum,
putative
Length = 1521
Score = 567 bits (286), Expect = e-161
Identities = 866/1058 (81%), Gaps = 1/1058 (0%)
Strand = Plus / Plus
Query: 49 gattttgatccaagtaatccacctcccttcaagattgcagagatccgagctgccattcct 108
||||||||||| || |||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 229 gattttgatcccagcgatccccctcctttcaagattgctgagatccgagctgcgattcct 288
Query: 109 aaccattgttgggtcaagaatccatggaggtctttgagctatgtcttaagagatattatt 168
|| || || ||| |||||||||||||||||||| | ||||| || ||||||||| | |
Sbjct: 289 aagcactgctggatcaagaatccatggaggtctctcagctacgttttaagagatgctttc 348
Query: 169 ataatttttgcattggcagcatctgcgatatattgcaatacatggtggttttggccattc 228
| | |||| ||||| || |||| | | | || | ||||| |||||||| ||
Sbjct: 349 gttgtccttgctttggctgctgctgctcttttcctcgattcttggtgcttttggccgctc 408
Query: 229 tactgggctgctcaagggacaatgttctgggctatctttgttcttggccatgattgtggc 288
|||||||||||||| || || ||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 409 tactgggctgctcagggtactatgttttgggctatctttgttctcggccatgattgcggc 468
Query: 289 catggaagtttttctgataattcactgctaaaataatatagtgggccatttcctgcattc 348
||||| || ||||| |||| | ||||| || ||| | ||||| ||| || |||||||
Sbjct: 469 catggcagcttttccgatagcactctgctcaac-aatgtggtggggcatctcttgcattc 527
Query: 349 ttccattcttgtaccttaccatggatggagaattagccataggactcaccaccaatatca 408
||| |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct: 528 ttcgattcttgtgccttatcatggatggagaatcagccataggactcaccaccagaatca 587
Query: 409 tggaaatgtagaaaaggatgaatcttgggttccgttacctgagaagatctataaggaatt 468
|| ||||| || ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 588 cgggaatgtggacaaggatgaatcttgggttccgttgcctgagaagatctataatagttt 647
Query: 469 ggatttaagtacacggattatgagattcactatccctctccccatgcttgcatatccttt 528
||| | ||||| ||||| ||||||||||| |||||||||| |||||||||||||| |
Sbjct: 648 agatgtcagtactcggataatgagattcacggtccctctccctttgcttgcatatcctat 707
Query: 529 ttacctgtggtcaaggagtccagggaaagaaggttcacacttcaatccttatagcaactt 588
|| |||||| |||| |||| || ||||| ||||||||||||| ||| || || ||||
Sbjct: 708 atatctgtggacaagaggtccgggcaaagacggttcacacttcagtccctacagtgactt 767
Query: 589 atttgcgcctcatgagagaaaagctgtgttaacctctactttgtgttggtctgtaatggc 648
||||| || ||||||| | |||||||||||| || || |||||||| | | |||
Sbjct: 768 gtttgccccaaatgagaggagagctgtgttaacttcaaccgtgtgttggattttgatgat 827
Query: 649 tcttctgctattctgttcatgctttatttttgggcctgttcaagtgctcaagttctatgg 708
||||||||| ||| ||||||||| ||||||| |||| |||||||| ||| |||| ||
Sbjct: 828 tcttctgctcctctactcatgctttgtttttggttctgtccaagtgcttaagctctacgg 887
Query: 709 aattccatattggatttttgtaatgtggctggactttgttacttacctgcatcaccacgg 768
|||||||| ||||| | |||||||| || ||||| || |||||||||||||||||
Sbjct: 888 tgttccatatataattttcatcatgtggcttgattttgtaacatacctgcatcaccacgg 947
Query: 769 acatgaccaaaaacttccctggtaccggggcaaggaatggagttacctgagaggagggct 828
|||||| || ||||||||||||||||| ||||||||||||||||| ||| | || || ||
Sbjct: 948 acatgagcagaaacttccctggtaccgcggcaaggaatggagttatctgcgtggcggact 1007
Query: 829 aacaacagttgatcgcgattacggatttttcaacaacatccaccatgatattggcacgca 888
||||||||||||||| ||||| |||| | || ||||| |||||||| |||||||| ||
Sbjct: 1008 aacaacagttgatcgtgattatggatggataaataacattcaccatgacattggcacaca 1067
Query: 889 tgttattcatcatttgtttcctcaaatcccacactatcatctaatagaagcgacaaaagc 948
|||||| |||||| ||||||||||||||||||| ||||| | ||||||||||||| ||
Sbjct: 1068 tgttatacatcatctgtttcctcaaatcccacattatcacttggtagaagcgacaaaggc 1127
Query: 949 agcaaagccagtgctgggaaagtactacagagagccaaagaaatcaggggcatttccatt 1008
||| ||||||||||||||||||||||| ||||| |||| ||| || ||| |||||||| |
Sbjct: 1128 agctaagccagtgctgggaaagtactatagagaaccaaggaagtctgggccatttccact 1187
Query: 1009 tcacttgttcgaaagtctacttagaagcattagagaagatcattatgtgagcgacattgg 1068
|||| | || |||| |||| | | |||||| || ||||||| || ||||||||||||||
Sbjct: 1188 tcacctatttgaaaatctagtaaaaagcatcagccaagatcactacgtgagcgacattgg 1247
Query: 1069 agaaattgtgtactatcaaacagaccctgagctataca 1106
||| | ||||| ||||| ||||| |||||||| ||||
Sbjct: 1248 agacgtggtgtattatcagacagatcctgagctgtaca 1285
>28176.m000273 Omega-3 fatty acid desaturase, chloroplast precursor,
putative
Length = 1359
Score = 159 bits (80), Expect = 4e-38
Identities = 248/304 (81%)
Strand = Plus / Plus
Query: 693 tgctcaagttctatggaattccatattggatttttgtaatgtggctggactttgttactt 752
|||| ||| |||||||||||||||| ||| ||||||| ||||||||||||| ||| || |
Sbjct: 929 tgcttaagctctatggaattccatactgggtttttgttatgtggctggactctgtgacat 988
Query: 753 acctgcatcaccacggacatgaccaaaaacttccctggtaccggggcaaggaatggagtt 812
|| |||||||||| || ||||| | |||||||| |||||||| || || ||||||||||
Sbjct: 989 acatgcatcaccatggtcatgaagataaacttccttggtaccgtggaaaagaatggagtt 1048
Query: 813 acctgagaggagggctaacaacagttgatcgcgattacggatttttcaacaacatccacc 872
| |||||||||||||| || ||| ||||||| || || || | | || |||||||| |
Sbjct: 1049 atctgagaggagggcttacgacacttgatcgtgactatggctggattaataacatccatc 1108
Query: 873 atgatattggcacgcatgttattcatcatttgtttcctcaaatcccacactatcatctaa 932
||||||| || || ||||| ||||| || | || || ||||||||||| ||||| |||
Sbjct: 1109 atgatatagggacccatgtcattcaccacctcttcccccaaatcccacattatcacttaa 1168
Query: 933 tagaagcgacaaaagcagcaaagccagtgctgggaaagtactacagagagccaaagaaat 992
| || || || ||||||| || || ||||| |||||||||||| | |||||||||||||
Sbjct: 1169 ttgaggcaactgaagcagccaaacccgtgctcggaaagtactaccgggagccaaagaaat 1228
Query: 993 cagg 996
||||
Sbjct: 1229 cagg 1232
Score = 113 bits (57), Expect = 2e-24
Identities = 196/241 (81%), Gaps = 1/241 (0%)
Strand = Plus / Plus
Query: 218 tttggccattctactgggctgctcaagggacaatgttctgggctatctttgttcttggcc 277
||||||| || || |||||||||||||| || ||||| |||||| | |||||||||||||
Sbjct: 455 tttggcctttgtattgggctgctcaaggaaccatgttttgggctttgtttgttcttggcc 514
Query: 278 atgattgtggccatggaagtttttctgataattcactgctaaaataatatagtgggccat 337
|||||||||| |||||||| ||||| |||| | | | ||||| | | || || |||
Sbjct: 515 atgattgtgggcatggaagcttttcaaataa-taataagttaaatagtgttgttggacat 573
Query: 338 ttcctgcattcttccattcttgtaccttaccatggatggagaattagccataggactcac 397
| || |||||||| |||||||||||||| |||||||||||||| || || |||||||||
Sbjct: 574 cttcttcattcttcaattcttgtaccttatcatggatggagaatcagtcacaggactcac 633
Query: 398 caccaatatcatggaaatgtagaaaaggatgaatcttgggttccgttacctgagaagatc 457
|| ||| | |||||| |||| || || |||||||| ||| |||||| ||||||| |||
Sbjct: 634 catcaaaaccatggacatgttgagaatgatgaatcatggcatccgttgtctgagaaaatc 693
Query: 458 t 458
|
Sbjct: 694 t 694
>29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor
Length = 1383
Score = 143 bits (72), Expect = 3e-33
Identities = 237/292 (81%)
Strand = Plus / Plus
Query: 702 tctatggaattccatattggatttttgtaatgtggctggactttgttacttacctgcatc 761
||||||| ||||| || ||||| ||||| |||||| |||||||||| || ||| |||| |
Sbjct: 953 tctatggcattccctactggatctttgtcatgtggttggactttgtgacctacttgcacc 1012
Query: 762 accacggacatgaccaaaaacttccctggtaccggggcaaggaatggagttacctgagag 821
|||| || || || | |||||||||||||| || || |||| ||||||||| || ||||
Sbjct: 1013 accatggtcacgaggataaacttccctggtatcgcggaaaggcatggagttatctaagag 1072
Query: 822 gagggctaacaacagttgatcgcgattacggatttttcaacaacatccaccatgatattg 881
||||||| ||||| |||||||||| ||||||| |||| |||||||||||||| || |
Sbjct: 1073 gagggcttacaacccttgatcgcgactacggatggatcaataacatccaccatgacatag 1132
Query: 882 gcacgcatgttattcatcatttgtttcctcaaatcccacactatcatctaatagaagcga 941
| || || |||||||||||| | || ||||||||||||||||| || || | ||||| |
Sbjct: 1133 gaacccacgttattcatcatctcttccctcaaatcccacactaccacttagtcgaagcaa 1192
Query: 942 caaaagcagcaaagccagtgctgggaaagtactacagagagccaaagaaatc 993
| ||||||| ||||| || |||| || |||||| | || |||||||||||
Sbjct: 1193 ctgaagcagctaagcctgtaatggggaaatactaccgggaaccaaagaaatc 1244
Score = 81.8 bits (41), Expect = 8e-15
Identities = 156/193 (80%), Gaps = 1/193 (0%)
Strand = Plus / Plus
Query: 244 gggacaatgttctgggctatctttgttcttggccatgattgtggccatggaagtttttct 303
||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||| ||
Sbjct: 496 gggactatgttctgggctctctttgttcttggccacgattgtggtcatggaagtttctcc 555
Query: 304 gataattcactgctaaaataatatagtgggccatttcctgcattcttccattcttgtacc 363
||||| || ||| |||| | | || || ||| | || |||||||| || ||||| ||
Sbjct: 556 aataatccaaagct-gaatagtgtggttggtcatctgcttcattcttcaatccttgttcc 614
Query: 364 ttaccatggatggagaattagccataggactcaccaccaatatcatggaaatgtagaaaa 423
||| |||||||||||||| || || || || || || ||| | |||||| |||| || ||
Sbjct: 615 ttatcatggatggagaatcagtcacagaacccatcatcaaaaccatggacatgttgagaa 674
Query: 424 ggatgaatcttgg 436
||||||||||||
Sbjct: 675 tgatgaatcttgg 687
Score = 54.0 bits (27), Expect = 2e-06
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 112 cattgttgggtcaagaatccatggaggtctttgagctatgtcttaagagat 162
||||||||||| |||||||||||||| ||| ||||||| || || ||||||
Sbjct: 364 cattgttgggttaagaatccatggagatctatgagctacgttttgagagat 414