Jatropha Genome Database

JcCA0268721.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0268721.10 + phase: 0 /partial
         (865 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28565.m000332 conserved hypothetical protein                          125   5e-28

>28565.m000332 conserved hypothetical protein
          Length = 915

 Score =  125 bits (63), Expect = 5e-28
 Identities = 306/389 (78%), Gaps = 3/389 (0%)
 Strand = Plus / Plus

                                                                       
Query: 68  ccccgttgaaatgggaacagaagttggaagctgctgcgaaggcaaaggctgaagctgaag 127
           |||| ||||||||||| |||||||| ||||||||||| || ||||||||||| |||||||
Sbjct: 68  cccctttgaaatgggagcagaagttagaagctgctgcaaaagcaaaggctgatgctgaag 127

                                                                       
Query: 128 ccaaagagaggaagcagaaagctgcaaagcgcaaaagaagatctgtttcaaaatctgata 187
           ||||||||||||||||||| ||| ||||||   | | ||||| ||  ||||| ||||| |
Sbjct: 128 ccaaagagaggaagcagaaggcttcaaagc---ataaaagatgtgcatcaaagtctgaca 184

                                                                       
Query: 188 ctgacagtgatagcgacagtaatgatgggagaaagtctaggaaaagatcccataggaaac 247
           ||||||||||||| || ||| ||||||   ||||||||| ||| |||   || | ||| |
Sbjct: 185 ctgacagtgatagtgatagtgatgatgtccgaaagtctaagaagagaagtcacaagaagc 244

                                                                       
Query: 248 acagaaagcatgcccactctgattcaggtgacaatgagaagaggagggnnnnnnnntcca 307
           |||||| ||||      |||||||| ||||| ||||||| |||||| |        || |
Sbjct: 245 acagaaggcatataagttctgattctggtgagaatgagaggaggagagaaaagaattcta 304

                                                                       
Query: 308 agcgtaagccaaagagacggtcctcggattcaaatgatgacagtagtgacggttttgaga 367
           |||| |||||||||||| ||| |||    |||| ||||||  | | |||  ||| ||| |
Sbjct: 305 agcgaaagccaaagagaaggtgctccagctcaagtgatgagggcactgatagttctgaaa 364

                                                                       
Query: 368 gtgattctgaggaagaaaggagaaggaagaagagaaatcataggagacacgggcatcact 427
           | || | ||| ||||||||||| |||||||||||||| ||| | |||||  |||||||| 
Sbjct: 365 gcgaatttgaagaagaaaggaggaggaagaagagaaaccatggaagacataggcatcaca 424

                                        
Query: 428 attcaagattggattccagttcttttgat 456
           |||||||||  ||||||||| ||| ||||
Sbjct: 425 attcaagatcagattccagtgcttctgat 453