Jatropha Genome Database

JcCA0265561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0265561.10 + phase: 2 /partial
         (385 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29681.m001313 WD-repeat protein, putative                             250   5e-66

>29681.m001313 WD-repeat protein, putative
          Length = 1269

 Score =  250 bits (126), Expect = 5e-66
 Identities = 318/382 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1    gttatacagatcatcagaacaaaccaaccagcggatattgtttgatattgaaccctttgg 60
            ||||||||||||  | || ||||| |||||||||||||| |||||| |||| |||| |||
Sbjct: 882  gttatacagatccacggagcaaactaaccagcggatattatttgatgttgagccctatgg 941

                                                                        
Query: 61   ccgacatcttggcacaggtggtcaggatgggttggttcatatatatgatctacaaactgg 120
             ||  |||| | |||||||||||||||||| ||||||||| | ||||||||||||| |||
Sbjct: 942  tcggtatctcgccacaggtggtcaggatggtttggttcatgtttatgatctacaaagtgg 1001

                                                                        
Query: 121  acaatggacatctagttttcaggctgcagcagacacagtcagtggtttctcattccatcc 180
             || |||| |||| | || |||||||||||||||||||| | ||| ||||| ||||||||
Sbjct: 1002 gcagtggatatctggcttccaggctgcagcagacacagttaatggcttctccttccatcc 1061

                                                                        
Query: 181  attcctgcctatggcagcctcttcatcaggacatcgaagatttcaagttcctgatgatgg 240
              || |||||||||| || ||||||||||| ||||| || ||||||||||||||||||||
Sbjct: 1062 gatcttgcctatggctgcttcttcatcagggcatcggaggtttcaagttcctgatgatgg 1121

                                                                        
Query: 241  ccatgagaatttgcttttgaatgatgatgaaaactgcgcctcagtgtggagtttcttcta 300
             | |||| |||||   ||| ||| |||||||||||| ||| | || |||||||||| |||
Sbjct: 1122 gcctgaggatttgtgcttgcatggtgatgaaaactgtgccactgtttggagtttctccta 1181

                                                                        
Query: 301  tgcttctgcaatggaaaatggtaccgatgtccaagttggtgattttaacagtcaatcaga 360
            |||||| ||| |||| |||||  || |  |||| | |||||| |||||||||||||||||
Sbjct: 1182 tgcttcagcagtggagaatggcgccaacatccatggtggtgaatttaacagtcaatcaga 1241

                                  
Query: 361  aagtgatttgcaccaccaggat 382
            || |||| ||  ||||||||||
Sbjct: 1242 aaatgatatgatccaccaggat 1263