Jatropha Genome Database

JcCA0262351.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0262351.10 - phase: 0 
         (498 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29703.m001484 conserved hypothetical protein                          242   2e-63

>29703.m001484 conserved hypothetical protein
          Length = 501

 Score =  242 bits (122), Expect = 2e-63
 Identities = 269/318 (84%)
 Strand = Plus / Plus

                                                                       
Query: 114 caagtctttctcacgcgccgaaatcctcggcattgtcacctcccgcgagcataaaccaaa 173
           |||||| ||||||||||||||||||||||| |||||||| ||| ||||||| |||||| |
Sbjct: 114 caagtccttctcacgcgccgaaatcctcggtattgtcacttcctgcgagcacaaaccaca 173

                                                                       
Query: 174 caaattcctcaaattcacgatcgacgatggcaccggctgcgttagctgcgttctctggct 233
           ||||||||| |||||||| |||||||| ||||| |||||||||   ||| ||||||||||
Sbjct: 174 caaattcctgaaattcacaatcgacgacggcacaggctgcgtttcatgcattctctggct 233

                                                                       
Query: 234 taaccagctcacttccccttatttttctcgccgcagccctccagatgttcgattaattgc 293
            |||||||||||||||||||| ||||||||||| ||| | |||| ||||||| |||||||
Sbjct: 234 caaccagctcacttccccttacttttctcgccggagcacaccagctgttcgactaattgc 293

                                                                       
Query: 294 cgacatggccagtcattttgcctcagagattaagatcggtgttgtggcttgtgtgcgcgg 353
           |   | ||||| ||| |||||||||  ||| ||||| || ||||| ||| | || || ||
Sbjct: 294 ctcaacggccactcactttgcctcattgatcaagattggagttgtagctagggttcgtgg 353

                                                                       
Query: 354 gaggattacgagctatagaggtgcggtgcagatcactgtctccgatgttgttattgagag 413
            ||||| ||||||||||||||| | |||||||| ||||  || ||||||||||| || ||
Sbjct: 354 caggatcacgagctatagaggtactgtgcagattactgcatctgatgttgttatcgaaag 413

                             
Query: 414 agatccaaatgcggagat 431
           |||||| ||||| |||||
Sbjct: 414 agatcctaatgccgagat 431



 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                      
Query: 1  atggatcaaaaataccaaaacacgcacgtaaaactactagcctt 44
          ||||||||||||| ||||||||  ||||||||||| ||||||||
Sbjct: 1  atggatcaaaaattccaaaacatacacgtaaaactcctagcctt 44