Jatropha Genome Database
- JcCA0254141.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0254141.20 + phase: 0 /partial
(1056 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29842.m003589 ATP synthase gamma chain 2, chloroplast, putative 1122 0.0
30027.m000853 ATP synthase gamma chain 2, chloroplast, putative 131 9e-30
>29842.m003589 ATP synthase gamma chain 2, chloroplast, putative
Length = 1131
Score = 1122 bits (566), Expect = 0.0
Identities = 911/1026 (88%)
Strand = Plus / Plus
Query: 1 atgtcttgctcaaatctgacaatgtgggtgtcctcaaaaccatctctttccgacacctct 60
||||||||||||||| |||||||||||||||||||||| ||||| ||||| ||||| |||
Sbjct: 1 atgtcttgctcaaatttgacaatgtgggtgtcctcaaagccatccctttctgacacttct 60
Query: 61 tcactcgcttttcgctcttctctcaacccttttcagcttccaagtcaaagttcagccacc 120
|||||| ||||| |||||||||||||||||||||||||||| | ||| || |||| || |
Sbjct: 61 tcactctctttttgctcttctctcaacccttttcagcttcctactcacagctcaggcagc 120
Query: 121 agcaatccatcaagatcctctgctgcgacccaaattcactgcggtctccgtgagcttcgg 180
| || || |||||||||||| |||| |||| |||||||||| |||||| || |||||
Sbjct: 121 aacagcccttcaagatcctcttctgccaccccaattcactgcaatctccgcgatcttcga 180
Query: 181 actcgtatagattcagtgaagaacacacagaagatcactgaagcaatgaagcttgttgct 240
|||||||||||||| ||||||||||||||||||||||| || || |||||| | ||||||
Sbjct: 181 actcgtatagattctgtgaagaacacacagaagatcaccgaggccatgaagttggttgct 240
Query: 241 gctgctaaagtgaggagagcacaagaagctgtcgtcaatggtaggcctttctctgaaact 300
|| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 241 gcagctaaagttaggagagcacaggaagctgttgtcaatggtaggcctttctctgaaact 300
Query: 301 cttgtagaagttctttacaatattaatgaacaactccaaactgaggacatagatgcgcct 360
|| |||||||||||||| || || |||||||| || ||||| ||||||||||||| |||
Sbjct: 301 ctagtagaagttctttataacataaatgaacagctgcaaaccgaggacatagatgttcct 360
Query: 361 ctcaccaaagttaggcctgtcaagaaagttgctcttgttgtttgcactggtgatagaggt 420
||||| ||| |||||||||||||||||||||| | |||||| ||||| |||||||||
Sbjct: 361 ctcactaaaaataggcctgtcaagaaagttgctttagttgttgttactggcgatagaggt 420
Query: 421 ctttgtggaggtttcaataatgctattatcaagaaagcagaagcaagaattgcagaattg 480
|||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||||||
Sbjct: 421 ctttgtggaggttttaacaataatattatcaagaaagctgaatcaagaattgcagaattg 480
Query: 481 aaggatcttggccttaattatactgttattagtgttggaaagaagggtaactcttatttt 540
|| |||||||| || |||||||| | ||||| ||||| || ||||| |||||||||||
Sbjct: 481 aaagatcttggagttgattatactatcattagcgttgggaaaaagggcaactcttatttc 540
Query: 541 ttaaggcggccttatattccggtcgataggtttcttgagggcacctctcttcctacagct 600
||||||||||||| ||||| || ||||| |||||||| || || |||||||||||||
Sbjct: 541 ataaggcggccttacattccagttgatagatttcttgaaggaactaatcttcctacagct 600
Query: 601 aaagaagctcaggcaattgcagatgatgtcttttcactctttgttagcgaagaggttgat 660
||||| ||||| ||||||||||||||||| |||||||||||||| || ||||| |||||
Sbjct: 601 aaagaggctcaagcaattgcagatgatgtattttcactctttgtcagtgaagaagttgac 660
Query: 661 aaagtggagcttttatacacaaaatttgtgtcactggttaagtctgatcccgttatacac 720
|| || |||||| |||| ||||||||||||||||| |||||||| ||||| || || |||
Sbjct: 661 aaggttgagcttctatatacaaaatttgtgtcactagttaagtccgatccggtcattcac 720
Query: 721 accttgcttccactttcaccaaagggagagatatgtgatattaatgggaactgtgtagat 780
|||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||||||
Sbjct: 721 accttgcttccactctcaccagagggagagatttgtgatattaatggaaactgtgtagat 780
Query: 781 gcagctgaggatgagttctttaggttgacaactagagaagggaaattgactgtagagaga 840
|| ||||||||||||||||| ||||||||||| | ||||||||| || || ||||| |||
Sbjct: 781 gctgctgaggatgagttcttcaggttgacaacaaaagaagggaagttaaccgtagaaaga 840
Query: 841 gatgtggttaggactcaaacagcagatttctcaccaattttgcagtttgagcaggaccca 900
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 841 gatgtggttaggactcaaaccgtagatttctcaccaattttgcagtttgagcaggaccca 900
Query: 901 gttcagattcttgatgccttgttacctctatacttgaacagccagattttgaaggcattg 960
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 901 gttcagatacttgatgccttgctacctctatacttgaacagtcagattttgaaggcattg 960
Query: 961 caggaatcactagccagtgagcttgctgctagaatgagtgctatgagcaatgcaactgat 1020
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 961 caggaatcactagccagtgagcttgctgctaggatgagtgctatgagcaatgcaagtgat 1020
Query: 1021 aatgca 1026
||||||
Sbjct: 1021 aatgca 1026
>30027.m000853 ATP synthase gamma chain 2, chloroplast, putative
Length = 1146
Score = 131 bits (66), Expect = 9e-30
Identities = 126/146 (86%)
Strand = Plus / Plus
Query: 881 tgcagtttgagcaggacccagttcagattcttgatgccttgttacctctatacttgaaca 940
||||||||||||| |||||| |||||||||||||||| || | ||||| || |||||||
Sbjct: 887 tgcagtttgagcaagacccaattcagattcttgatgcaatgatgcctctttatttgaaca 946
Query: 941 gccagattttgaaggcattgcaggaatcactagccagtgagcttgctgctagaatgagtg 1000
| |||||||||| |||||||||||| |||||||| ||||||||||| || || |||| ||
Sbjct: 947 gtcagattttgagggcattgcaggagtcactagctagtgagcttgcagcaaggatgaatg 1006
Query: 1001 ctatgagcaatgcaactgataatgca 1026
| ||||| ||||| || |||||||||
Sbjct: 1007 ccatgagtaatgccacagataatgca 1032
Score = 115 bits (58), Expect = 6e-25
Identities = 196/242 (80%)
Strand = Plus / Plus
Query: 202 aacacacagaagatcactgaagcaatgaagcttgttgctgctgctaaagtgaggagagca 261
||||| || ||||||||||| |||||||| |||||||| ||||| || | || |||||
Sbjct: 208 aacactcaaaagatcactgaggcaatgaaacttgttgcagctgcgaagattagaagagct 267
Query: 262 caagaagctgtcgtcaatggtaggcctttctctgaaactcttgtagaagttctttacaat 321
||||||||||| |||||||||| || || | ||| | ||| | ||||| ||||| ||
Sbjct: 268 caagaagctgttatcaatggtagaccctttgccgaatcacttcttgaagtactttatcat 327
Query: 322 attaatgaacaactccaaactgaggacatagatgcgcctctcaccaaagttaggcctgtc 381
||||||||||| |||||| ||||| || |||| || | || || |||||||||||
Sbjct: 328 attaatgaacagctccaattagaggatattgatgttccgttaactaatgttaggcctgta 387
Query: 382 aagaaagttgctcttgttgtttgcactggtgatagaggtctttgtggaggtttcaataat 441
|||| |||||||||||||||| |||||||||||||| |||||||| ||||| ||||||
Sbjct: 388 aagagagttgctcttgttgttgttactggtgatagaggcctttgtggtggttttaataat 447
Query: 442 gc 443
||
Sbjct: 448 gc 449