Jatropha Genome Database
- JcCA0254141.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0254141.10 + phase: 0 /partial
(1308 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29842.m003590 pentatricopeptide repeat-containing protein, putative 793 0.0
>29842.m003590 pentatricopeptide repeat-containing protein, putative
Length = 1821
Score = 793 bits (400), Expect = 0.0
Identities = 1044/1256 (83%), Gaps = 2/1256 (0%)
Strand = Plus / Plus
Query: 8 ttatttatgctctttgcaaggaatgtaaattactagaagcaatgtcagtattctatcgaa 67
|||||||||||||| | |||||| ||| |||| |||||||| |||| ||| |||||||||
Sbjct: 506 ttatttatgctcttggtaaggaaggtagattagtagaagcagtgtcggtaatctatcgaa 565
Query: 68 gcttgaagcatggtatatggcctaatgttgttacttttaacatgatcatagatgttgctt 127
|||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 566 gcttgaagactggtatatggcctaatgttgttacttttaacatgattatagatggtgcca 625
Query: 128 gcaagatgggtgccatggatcttgccttaaaggtagttagcaagatggaagtcatgtcag 187
|||||||||||||||||||||||| || ||| | || || |||||||||||||||||||
Sbjct: 626 tcaagatgggtgccatggatcttgctttgaagcttgtcaggaagatggaagtcatgtcag 685
Query: 188 tgtactctattaggcccgactctataacttataattgtctcatcggtgggttctgcaaaa 247
| |||| ||| ||| |||||| ||||||||||| || | || |||||| |||||||
Sbjct: 686 gatgctctgttaagcctgactctgtaacttataatagttttgtcaatgggttttgcaaaa 745
Query: 248 tggggaaattaactatggcagagaaattaaaaaacgaaatgatggagaaagatattgtgc 307
| ||||| | || ||||||| |||| ||||| |||||| ||| |||||| |||| |
Sbjct: 746 ttgggaatctggctgtggcagaagaatttaaaaaggaaatgttggggaaagaaattgaac 805
Query: 308 ctaatgtgagaacctatgcaactttgatagatgggtattcaagagcaaggagtttggagg 367
|||||||||| ||||||||||||||| ||||||| || || ||| |||||||||||
Sbjct: 806 ctaatgtgaggacctatgcaactttggtagatggttacacacgagtggggagtttggaga 865
Query: 368 aggcatttaggttatgtgatgaaatgatgaaaaagggattggtaatgaattctgtcatat 427
| || ||||||||||| |||||| || || ||||||||||| || |||||||||||||
Sbjct: 866 atgcctttaggttatgcgatgaattggtggaaaagggattgttaccaaattctgtcatat 925
Query: 428 ataatacagtcatccactggctttatgtagaaggagatatggaaggagtttctttgctaa 487
||||| || ||||||| ||||||| | ||||||||||||||||||| |||||||||
Sbjct: 926 ataattcaatcatccattggctttccatggaaggagatatggaaggagcttctttgctgt 985
Query: 488 tctccagcatggttgacaatcggataccccctgataaattcacatattctattctcacaa 547
| || |||| |||| || |||||| ||||||| |||| ||||||||||| ||| |
Sbjct: 986 tatcggacatgattgataagcggatataccctgatcaatttacatattctatagtcatag 1045
Query: 548 agggtctttgtagaaatggtaatgttaatgaagcatttaaatttc-acagcaagattctt 606
|||||||||| |||||||| || | |||||||| |||||||||| ||| | |||||||
Sbjct: 1046 agggtctttgcagaaatggatatctaaatgaagcttttaaatttcttcag-atgattctt 1104
Query: 607 gaaaataaccttattgaagatgcattttcccacaatattcttataaattatttgtgtaga 666
|| | | |||| || |||||||||||| |||||| || |||||||||| |||||||||
Sbjct: 1105 gagatgagccttgttagagatgcattttcacacaatgttgttataaattacttgtgtaga 1164
Query: 667 agcaataatttatcaggagctaaacaactgctggccagtatgtatgtacgtggtctggtt 726
||||||||| || |||||||||| ||||||||||| | ||||||||| ||||| |||||
Sbjct: 1165 agcaataatctagcaggagctaagcaactgctggctaatatgtatgttcgtggcttggtt 1224
Query: 727 cctgacattgttacatttggtagtttgattgatgggcactgcaaggaaggcaatgttgaa 786
||||| ||||||||||||||| ||||||||| ||||||||||||| ||||| || |||
Sbjct: 1225 cctgatgttgttacatttggtactttgattgacaggcactgcaaggatggcaaagtcgaa 1284
Query: 787 aatgcagttcaggtctatgagaaaatgatgaagtcaggtgaaaaacccaatttggtactc 846
||||| |||||||||| ||||||||||| ||| |||| ||||| ||||| ||| || ||
Sbjct: 1285 aatgctattcaggtctacgagaaaatgataaagacaggggaaaagcccaacttgttaatc 1344
Query: 847 tacaattctgtcataaatggtttatgcaaggaggaaaggttggatcttgcaaggcttctc 906
||||||||||| |||||||| || |||||| | | || |||| ||||| ||| |
Sbjct: 1345 tacaattctgttataaatggctttgccaaggaaggatcatttgatcctgcaattcttttg 1404
Query: 907 gtagatacattactcaggatgaatttatttgatgtcataacttataacaccttgataaat 966
||||||||||| |||||| ||||||||||||| |||||||||||||||||||| ||
Sbjct: 1405 atagatacattaaggaggatgggtttatttgatgtcgtaacttataacaccttgatacat 1464
Query: 967 gggtattgcaacagcgggaagattgatgaggcttttgctttctcttttgcaatgaaaaat 1026
|||||||||||| | |||||||||||| |||| |||||||| | || | ||||| |||
Sbjct: 1465 gggtattgcaactgtgggaagattgatcaggcatttgctttgttttcagaaatgagaaac 1524
Query: 1027 gcaggaattgcagcaaaccatgccacttacaacacattgataaactttttgtgcaagctt 1086
|||||| |||| ||||| ||||||||||||||||||||||| |||||||||| |
Sbjct: 1525 agtggaattttggcaagccatgtcacttacaacacattgataaactctttgtgcaaggct 1584
Query: 1087 ggtcatattcaacaagcaaaggaactaatgaaggtgatgatccttcagggtttcgttcct 1146
|||||| ||| ||||||||||||||| |||||| ||||| | |||| ||||| |||||
Sbjct: 1585 ggtcatgttctacaagcaaaggaactgatgaagatgatggttcttcgcggtttgattcct 1644
Query: 1147 gattatataacatacacgattcttattaccagtttcagcaagaagtgcagccctgaagaa 1206
|||||| |||||||||| |||||||| |||||||||||||||||||| || || ||||||
Sbjct: 1645 gattatgtaacatacacaattcttatcaccagtttcagcaagaagtgtagtcccgaagaa 1704
Query: 1207 gtgattaaattacatgactacatggtacttaagggagtaatacctcataaacagac 1262
|||||| |||| |||||||| ||||| || ||||||||| ||||| ||| ||||||
Sbjct: 1705 gtgattgaattgcatgactatatggtcctcaagggagtagtacctgatagacagac 1760