Jatropha Genome Database
- JcCA0249841.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0249841.10 + phase: 0 /partial
(876 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29683.m000479 Rop guanine nucleotide exchange factor, putative 799 0.0
29912.m005502 hypothetical protein 66 4e-10
28934.m000056 Rop guanine nucleotide exchange factor, putative 56 4e-07
30170.m014310 Rop guanine nucleotide exchange factor, putative 54 1e-06
>29683.m000479 Rop guanine nucleotide exchange factor, putative
Length = 1743
Score = 799 bits (403), Expect = 0.0
Identities = 690/785 (87%), Gaps = 3/785 (0%)
Strand = Plus / Plus
Query: 95 gtggaaaaacttgcctgggagatatcatttaccgctacttaactgctgagcagttcaagc 154
|||||||| ||||||| ||||||||||| ||||||||| |||| |||||||||||| |
Sbjct: 956 gtggaaaagcttgccttggagatatcatctaccgctacataacagctgagcagttctcac 1015
Query: 155 cggaatgtcttcttgattgcctagacctctcaacagagcatcatacactcgaagtagcca 214
| |||||||||||||||||||||||||||||||| |||||||| ||||| ||| |||| |
Sbjct: 1016 cagaatgtcttcttgattgcctagacctctcaacggagcatcacacactggaaatagcta 1075
Query: 215 acaggattgaggcagccgttcatgtctggaagcagaaagaacagaaaaagcccacgaata 274
|||| |||||||| || | |||||||||||||||||||| |||| ||||| ||| | |
Sbjct: 1076 acagaattgaggcggcactgcatgtctggaagcagaaagatcagagaaagcacacaagtc 1135
Query: 275 acacaaaagttaagcactcatcatggggtgttaaggtcaaaggccttgttgctgacacca 334
|||| |||| || |||| |||||||||| | ||||||||||||||||||||||||||||
Sbjct: 1136 acacgaaagctaggcacacatcatggggaggcaaggtcaaaggccttgttgctgacacca 1195
Query: 335 aaa---agaatcattttatggcccatcgagctgagaccctcttacagagcctaaggcttc 391
||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 1196 aaagaaagaatacttttctggcccaacgagctgagaccctcttacagagcctaaggctcc 1255
Query: 392 gcttccccggccttccacagacagcattggatatgaacaagattcaatataacaaggacg 451
| ||||| |||||||| |||||||||||||||||| ||||||||||||| |||||||| |
Sbjct: 1256 gtttccctggccttcctcagacagcattggatatgcacaagattcaatacaacaaggatg 1315
Query: 452 ttggacagtcgattcttgaaagctactcgagagtaatggaaagcttggccttcaacatta 511
|||| ||||| |||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct: 1316 ttgggcagtcaattcttgaaagctattcaagagtaatggagagcttggccttcaacatta 1375
Query: 512 tggcaaggatagatgatgttctgtttgtagacgatgcctccaaacgatgtgctgcagcag 571
|||||||||||||||||||| | | |||||| |||||| | || ||||||||||||||||
Sbjct: 1376 tggcaaggatagatgatgttatttatgtagatgatgccacaaaccgatgtgctgcagcag 1435
Query: 572 aatcaatgtccctattcaatcggaatgggttgggtggtcttcctattcagaagcggatgt 631
|||||||||||||||||||| | | ||| ||||||| | |||||| |||||||| ||||
Sbjct: 1436 aatcaatgtccctattcaatagaagtggtctgggtggccatcctatccagaagcgaatgt 1495
Query: 632 cacctagccccttctccatccaacacagcccattcgcctctccatttgcaactccaactt 691
| ||||||||||||||||| ||||| ||||| || |||| |||||||||||||||||||
Sbjct: 1496 cgcctagccccttctccatacaacagagcccctttacctcgccatttgcaactccaactt 1555
Query: 692 tctgttcttccactccagtggctggaagcccagctagagcaccatcctctctaaatagga 751
|||||||||| || ||||||||||||||||||| || ||||||||||| |||| | ||
Sbjct: 1556 tctgttcttcgacaccagtggctggaagcccaggaagggcaccatcctccataaagatga 1615
Query: 752 acaacgtgaaggaagcaatcgatcagaagttagagaaaccatatgcagctgactttgaga 811
||||| | |||||||||| ||||||||||| |||||||||| |||||||||||||||
Sbjct: 1616 acaacattaaggaagcaactgatcagaagtttgagaaaccatgcccagctgactttgaga 1675
Query: 812 aggtttggtcgtacactggcaacctcagttcaagaagagtttctggagatgcccctgagc 871
|||||||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct: 1676 aggtttggtcatacactggcaacctaagttcaagaagagtttcgggagatgctcctgagc 1735
Query: 872 gagat 876
|||||
Sbjct: 1736 gagat 1740
>29912.m005502 hypothetical protein
Length = 561
Score = 65.9 bits (33), Expect = 4e-10
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 429 caagattcaatataacaaggacgttggacagtcgattcttgaaagctactcgagagtaat 488
|||||| ||||| |||||||| || |||||| | ||||| ||||||||||| ||| ||||
Sbjct: 144 caagatccaatacaacaaggatgtaggacaggctattctagaaagctactcaagaataat 203
Query: 489 ggaaagcttggccttca 505
||||||||||| ||||
Sbjct: 204 agaaagcttggcattca 220
>28934.m000056 Rop guanine nucleotide exchange factor, putative
Length = 2022
Score = 56.0 bits (28), Expect = 4e-07
Identities = 76/92 (82%)
Strand = Plus / Plus
Query: 394 ttccccggccttccacagacagcattggatatgaacaagattcaatataacaaggacgtt 453
||||| || |||||||||||| | || ||||||| ||| ||||| || |||||||| |||
Sbjct: 1579 ttcccaggtcttccacagacaaccttagatatgagcaaaattcagtacaacaaggatgtt 1638
Query: 454 ggacagtcgattcttgaaagctactcgagagt 485
|| |||| ||||| || |||||||| |||||
Sbjct: 1639 gggaagtctattctagagagctactcaagagt 1670
>30170.m014310 Rop guanine nucleotide exchange factor, putative
Length = 1572
Score = 54.0 bits (27), Expect = 1e-06
Identities = 78/95 (82%)
Strand = Plus / Plus
Query: 358 cgagctgagaccctcttacagagcctaaggcttcgcttccccggccttccacagacagca 417
||||||||||||||||| || ||||||||| | || ||||| | || ||||||||| |
Sbjct: 1126 cgagctgagaccctcttgcatagcctaaggttgcgtttccctgctctcccacagacaact 1185
Query: 418 ttggatatgaacaagattcaatataacaaggacgt 452
||||| | ||||||| ||||| |||||||||||
Sbjct: 1186 ttggacagttacaagatccaatacaacaaggacgt 1220