Jatropha Genome Database
- JcCA0249291.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0249291.10 - phase: 2 /pseudo/partial
(825 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
28093.m000117 Cellulose synthase A catalytic subunit 6 [UDP-form... 787 0.0
29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-form... 391 e-108
29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-form... 135 5e-31
29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-form... 115 4e-25
29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-form... 98 1e-19
29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-form... 86 4e-16
29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-form... 80 2e-14
>28093.m000117 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 2487
Score = 787 bits (397), Expect = 0.0
Identities = 562/617 (91%)
Strand = Plus / Plus
Query: 209 tctgagacatctgaatttgccagaaaatgggttcctttctgtaagaaatttaatatagag 268
|||||||||||||||||||| || |||||||||||||||||||| ||||||||||| |||
Sbjct: 460 tctgagacatctgaatttgctaggaaatgggttcctttctgtaaaaaatttaatattgag 519
Query: 269 ccccgagcccctgaatggtatttctctcagaaggttgactatctaaagaataaagtccac 328
|||||||||||||| |||||||| | ||||||| |||||||| |||| ||||||||||||
Sbjct: 520 ccccgagcccctgagtggtatttttgtcagaagattgactatttaaaaaataaagtccac 579
Query: 329 ccatcatttgtgagggaaaggcgtgctatgaagagagaatatgaagaattcaaagttaga 388
||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 580 ccagcatttgtcagggaaaggcgtgctatgaagagagaatatgaagaattcaaagttcga 639
Query: 389 ataaatggattggttgccactgcacaaaaagtaccagaagatggctggacaatgcaggat 448
||||||||||| ||| |||||||||| ||||| |||||||| || |||||||||||||||
Sbjct: 640 ataaatggattagtttccactgcacagaaagtcccagaagacggttggacaatgcaggat 699
Query: 449 ggaactccatggcccggtaacaatgtgcgagatcatcctggcatgattcaggtcttcctt 508
|||||||||||||| || |||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 700 ggaactccatggcctggaaacaatgttcgagatcaccctggcatgattcaggtcttcctt 759
Query: 509 ggtcatactggtgtccgtgatttggaagggaatgaattacctcgtttggtatatgtctct 568
|| |||| |||||| |||||| | ||||| ||||| || ||||||||||| || || |||
Sbjct: 760 ggacatagtggtgttcgtgatgtagaaggaaatgagttgcctcgtttggtttacgtttct 819
Query: 569 cgtgagaagagaccagggtttgaacaccataaaaaggctggggccatgaattctctggtt 628
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct: 820 cgtgagaagagaccaggctttgaacaccataaaaaggctggagccatgaatgctctgatt 879
Query: 629 cgggtctctgctgttctatcaaatgctccttatcttttgaatgtggactgtgatcactat 688
|| |||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||
Sbjct: 880 cgtgtctctgcggttctatcaaatgctccatatcttttgaacgtggattgtgatcactat 939
Query: 689 attaacaacagcaaagctcttagagaagctatgtgtttcatgatggatccaacatcaggg 748
||||||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||
Sbjct: 940 attaacaacagtaaagctcttagagaagccatgtgttttatgatggatccaacactgggc 999
Query: 749 aagaaagtttgctatgtccagtttcctcaaagatttgatggtattgatcgtcatgacaga 808
||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 1000 aagaaagtttgttatgtgcagtttcctcaaagattcgatggtattgaccgtcatgataga 1059
Query: 809 tactcaaatcggaatgt 825
|||||||||||||||||
Sbjct: 1060 tactcaaatcggaatgt 1076
Score = 81.8 bits (41), Expect = 6e-15
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 133 tatcatggattctcgatcagtttccaaaatggtatccaattgaacgtgagacataccttg 192
||||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||
Sbjct: 191 tatcatggattcttgatcagtttccaaaatggtaccctatagaacgagaaacataccttg 250
Query: 193 atcgg 197
|||||
Sbjct: 251 atcgg 255
>29863.m001055 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3288
Score = 391 bits (197), Expect = e-108
Identities = 512/617 (82%)
Strand = Plus / Plus
Query: 209 tctgagacatctgaatttgccagaaaatgggttcctttctgtaagaaatttaatatagag 268
|||||||||||||||||||| ||||| ||||| |||||||| ||||||| ||| || ||
Sbjct: 1231 tctgagacatctgaatttgcaagaaagtgggtccctttctgcaagaaatataaaattgaa 1290
Query: 269 ccccgagcccctgaatggtatttctctcagaaggttgactatctaaagaataaagtccac 328
||||| || || |||||||| || | |||||||||||||| | || ||||||| |
Sbjct: 1291 ccccgtgctccagaatggtactttggtgagaaggttgactatttgaaagataaagtagat 1350
Query: 329 ccatcatttgtgagggaaaggcgtgctatgaagagagaatatgaagaattcaaagttaga 388
||||||||| | |||||| | |||||||||||||||||||||||||| |||| |||| ||
Sbjct: 1351 ccatcatttatcagggaacgccgtgctatgaagagagaatatgaagagttcagagttcga 1410
Query: 389 ataaatggattggttgccactgcacaaaaagtaccagaagatggctggacaatgcaggat 448
||||||||| ||||| |||||||||| || || || || || || |||||||||||||||
Sbjct: 1411 ataaatggactggtttccactgcacagaaggttcccgaggagggatggacaatgcaggat 1470
Query: 449 ggaactccatggcccggtaacaatgtgcgagatcatcctggcatgattcaggtcttcctt 508
|||||||||||||| || || ||||| ||||||||||||| ||||||||||| |||||
Sbjct: 1471 ggaactccatggcctgggaataatgtcagagatcatcctggaatgattcaggttttcctg 1530
Query: 509 ggtcatactggtgtccgtgatttggaagggaatgaattacctcgtttggtatatgtctct 568
|| || ||||| | |||| | ||||| ||| || ||||| || |||| || || |||
Sbjct: 1531 ggacaacacggtgttcatgatgttgaaggaaatcaactaccttgtctggtttacgtgtct 1590
Query: 569 cgtgagaagagaccagggtttgaacaccataaaaaggctggggccatgaattctctggtt 628
||||||||||||||||| ||||| ||||| |||||||| || || |||||| || ||||
Sbjct: 1591 cgtgagaagagaccaggatttgatcaccacaaaaaggccggcgcaatgaatgctttggtg 1650
Query: 629 cgggtctctgctgttctatcaaatgctccttatcttttgaatgtggactgtgatcactat 688
|||| ||||| | ||||||||||||| || || ||||||| || |||||||| |||
Sbjct: 1651 agggtatctgcaatcatatcaaatgctccatacctgctgaatgtcgattgtgatcattat 1710
Query: 689 attaacaacagcaaagctcttagagaagctatgtgtttcatgatggatccaacatcaggg 748
|| || ||||| ||||| ||| | || |||||||| |||||||||||||||||||| ||
Sbjct: 1711 ataaataacagtaaagcacttcgtgatgctatgtgcttcatgatggatccaacatctggc 1770
Query: 749 aagaaagtttgctatgtccagtttcctcaaagatttgatggtattgatcgtcatgacaga 808
|||||| | || ||||| || |||||||||||||||||||| |||||||||||||| |||
Sbjct: 1771 aagaaaatctgttatgtacaatttcctcaaagatttgatgggattgatcgtcatgataga 1830
Query: 809 tactcaaatcggaatgt 825
||||| ||||| |||||
Sbjct: 1831 tactccaatcgcaatgt 1847
Score = 60.0 bits (30), Expect = 2e-08
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 20 atggaagactggaagaaaaggcagaatgacaaacttcaggtggtcaagcatgaaggggga 79
||||| || |||||||||| |||| |||| |||||||||||||| |||||| |||| |||
Sbjct: 670 atggaggagtggaagaaaaagcagcatgaaaaacttcaggtggttaagcatcaaggtgga 729
Query: 80 aa 81
||
Sbjct: 730 aa 731
>29637.m000754 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3135
Score = 135 bits (68), Expect = 5e-31
Identities = 298/372 (80%), Gaps = 2/372 (0%)
Strand = Plus / Plus
Query: 440 atgcaggatggaactccatggcccggtaacaatgtgcgagatcatcctggcatgattcag 499
||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 1291 atgcaggatggtactccatggcctggaaacaacacaagagatcatcctggcatgattcag 1350
Query: 500 gtcttccttggtcatactggtgtccgtgatttggaagggaatgaattacctcgtttggta 559
|||| ||||| | |||| || |||| ||||||| || || | || || | |||
Sbjct: 1351 gtctatcttggaagtgagggtgcccttgatgtggaaggtaaggagcttccccggcttgta 1410
Query: 560 tatgtctctcgtgagaagagaccagggtttgaacaccataaaaaggctggggccatgaat 619
||||| |||||||||||| |||| || | | |||| || || || || || |||||||||
Sbjct: 1411 tatgtttctcgtgagaagcgacctggttatcaacatcacaagaaagccggtgccatgaat 1470
Query: 620 tctctggttcgggtctctgctgttctatcaaatgctccttatcttttgaatgtggactgt 679
||||| |||| |||||||| || || | ||||| |||| | | ||||| |||| |||
Sbjct: 1471 gctctgattcgagtctctgcagtgctcaccaatgccccttttatgttgaacttggattgt 1530
Query: 680 gatcactatattaacaacagcaaagctcttagagaagctatgtgtttcatgatggatcca 739
||||| || ||||||||||||||||| || ||||||||||||||| | ||||||||
Sbjct: 1531 gatcattaccttaacaacagcaaagctgcaagggaagctatgtgtttcttaatggatccc 1590
Query: 740 acatca-gggaagaaagtttgctatgtccagtttcctcaaagatttgatggtattgatcg 798
|| | |||||||| || ||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 1591 -cagctcgggaagaaggtctgctatgtccagtttcctcaaaggtttgatggtatcgatcg 1649
Query: 799 tcatgacagata 810
|||||| |||||
Sbjct: 1650 tcatgatagata 1661
>29482.m000171 Cellulose synthase A catalytic subunit 3 [UDP-forming],
putative
Length = 2934
Score = 115 bits (58), Expect = 4e-25
Identities = 285/358 (79%), Gaps = 2/358 (0%)
Strand = Plus / Plus
Query: 440 atgcaggatggaactccatggcccggtaacaatgtgcgagatcatcctggcatgattcag 499
||||| ||||||||||||||||| || |||||| ||||||||||| ||||||||
Sbjct: 1195 atgcaagatggaactccatggcctggaaacaataccaaggatcatcctggtatgattcaa 1254
Query: 500 gtcttccttggtcatactggtgtccgtgatttggaagggaatgaattacctcgtttggta 559
|| || |||||||||| ||| | || |||| | ||||||||||| | ||||| | ||
Sbjct: 1255 gtgtttcttggtcatagtggaggccatgatgttgaagggaatgagcttcctcgccttgtt 1314
Query: 560 tatgtctctcgtgagaagagaccagggtttgaacaccataaaaaggctggggccatgaat 619
||||||||||||||||| || || || |||| ||| || || || || || |||||||||
Sbjct: 1315 tatgtctctcgtgagaaaaggcctggatttgcacatcacaagaaagccggtgccatgaat 1374
Query: 620 tctctggttcgggtctctgctgttctatcaaatgctccttatcttttgaatgtggactgt 679
| ||| |||| ||||| || || || | ||||| |||| | |||| |||| |||
Sbjct: 1375 gccctgattcgagtctccgccgtactcaccaatgcacctttcatgctgaacttggattgt 1434
Query: 680 gatcactatattaacaacagcaaagctcttagagaagctatgtgtttcatgatggatcca 739
||||| ||||| || |||||||| || | ||||||| ||||||||| ||||||||||
Sbjct: 1435 gatcattatataaataacagcaaggccgtccgagaagccatgtgtttcttgatggatcct 1494
Query: 740 -acatcagggaagaaagtttgctatgtccagtttcctcaaagatttgatggtattgat 796
| || || ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1495 cagatt-ggaaagaaagtttgctatgtacagtttcctcaaagatttgatggtattgat 1551
>29606.m000101 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3258
Score = 97.6 bits (49), Expect = 1e-19
Identities = 454/589 (77%)
Strand = Plus / Plus
Query: 208 gtctgagacatctgaatttgccagaaaatgggttcctttctgtaagaaatttaatataga 267
||||||||| || || ||||| || |||||||| ||||| || ||||||| ||| || ||
Sbjct: 1224 gtctgagacttcagagtttgctaggaaatgggtacctttttgcaagaaatataacattga 1283
Query: 268 gccccgagcccctgaatggtatttctctcagaaggttgactatctaaagaataaagtcca 327
||| || ||||| |||||||| || | |||||| |||| || | ||| ||||||| ||
Sbjct: 1284 gccacgggccccagaatggtactttacacagaagattgattacttgaaggataaagtgca 1343
Query: 328 cccatcatttgtgagggaaaggcgtgctatgaagagagaatatgaagaattcaaagttag 387
|||||||||| | || || | |||||||||||||||||||||||||| ||||||
Sbjct: 1344 aacatcatttgtaaaagagcggagagctatgaagagagaatatgaagaatttaaagttca 1403
Query: 388 aataaatggattggttgccactgcacaaaaagtaccagaagatggctggacaatgcagga 447
|| ||||| | ||||| | |||||||| | || ||||| || |||| ||||| ||
Sbjct: 1404 tatcaatgggcttgttgcaaaggcacaaaagattcctgaagaaggatggattatgcaaga 1463
Query: 448 tggaactccatggcccggtaacaatgtgcgagatcatcctggcatgattcaggtcttcct 507
||| ||||||||||| || ||||| |||||||||| || ||||||||||| ||| |
Sbjct: 1464 tggtactccatggccaggaaacaacaccagagatcatccaggaatgattcaggttttctt 1523
Query: 508 tggtcatactggtgtccgtgatttggaagggaatgaattacctcgtttggtatatgtctc 567
|| || | ||| | | |||| || || |||||| | || || | || ||||| ||
Sbjct: 1524 aggccaaaatggaggtcttgatgctgagggtaatgaactgccacgactagtttatgtttc 1583
Query: 568 tcgtgagaagagaccagggtttgaacaccataaaaaggctggggccatgaattctctggt 627
|||||| ||| | |||||||| ||||||| || || ||||| || |||||| | || ||
Sbjct: 1584 tcgtgaaaagcgtccagggttccaacaccacaagaaagctggtgctatgaatgcacttgt 1643
Query: 628 tcgggtctctgctgttctatcaaatgctccttatcttttgaatgtggactgtgatcacta 687
|||| || ||||| || | |||| |||| || |||||| | || |||||||||||
Sbjct: 1644 cagggtatcagctgtccttactaatggacctttcctgttgaatcttgattgtgatcacta 1703
Query: 688 tattaacaacagcaaagctcttagagaagctatgtgtttcatgatggatccaacatcagg 747
|| ||||||||||| ||| | |||||||||||||||||| |||||||||||| ||
Sbjct: 1704 cataaacaacagcaaggctttgagagaagctatgtgtttcctgatggatccaaaccttgg 1763
Query: 748 gaagaaagtttgctatgtccagtttcctcaaagatttgatggtattgat 796
||| |||| || ||||| |||||||| || || |||||||||||||||
Sbjct: 1764 gaaacaagtatgttatgttcagtttccccagaggtttgatggtattgat 1812
>29761.m000416 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 2700
Score = 85.7 bits (43), Expect = 4e-16
Identities = 139/171 (81%)
Strand = Plus / Plus
Query: 208 gtctgagacatctgaatttgccagaaaatgggttcctttctgtaagaaatttaatataga 267
|||||| |||||||||||||| |||||||||||||||||||| ||||||| || || ||
Sbjct: 1179 gtctgaaacatctgaatttgctagaaaatgggttcctttctgcaagaaatacaacattga 1238
Query: 268 gccccgagcccctgaatggtatttctctcagaaggttgactatctaaagaataaagtcca 327
|| ||||| || |||||||| || |||| ||| | ||||| ||||| |||| || ||
Sbjct: 1239 accacgagctccagaatggtactttgctcaaaagatcgactacttaaaggataaggttca 1298
Query: 328 cccatcatttgtgagggaaaggcgtgctatgaagagagaatatgaagaatt 378
||||||||||| | || | | |||||||||||||||||||||||||
Sbjct: 1299 accatcatttgtcaaagaccgcagatctatgaagagagaatatgaagaatt 1349
>29848.m004649 Cellulose synthase A catalytic subunit 6 [UDP-forming],
putative
Length = 3252
Score = 79.8 bits (40), Expect = 2e-14
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 659 tatcttttgaatgtggactgtgatcactatattaacaacagcaaagctcttagagaagct 718
|||||||| ||||| || |||||||| || ||||||||||||||||||||| ||| ||
Sbjct: 1678 tatcttttaaatgttgattgtgatcattactttaacaacagcaaagctcttaaagaggca 1737
Query: 719 atgtgtttcatgatggatcc 738
||||| ||||||||||||||
Sbjct: 1738 atgtgcttcatgatggatcc 1757
Score = 69.9 bits (35), Expect = 2e-11
Identities = 89/107 (83%)
Strand = Plus / Plus
Query: 356 atgaagagagaatatgaagaattcaaagttagaataaatggattggttgccactgcacaa 415
|||||||||||||||||||||||||| || |||| |||| | | ||||| | ||||||
Sbjct: 1375 atgaagagagaatatgaagaattcaaggtgcgaattaatgcacttgttgctaaagcacaa 1434
Query: 416 aaagtaccagaagatggctggacaatgcaggatggaactccatggcc 462
|| | || ||||| || ||||||||||||||||| ||||| |||||
Sbjct: 1435 aagatgcctgaagaaggttggacaatgcaggatggtactccttggcc 1481
Score = 52.0 bits (26), Expect = 5e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 132 ttatcatggattctcgatcagtttccaaaatggtatcc 169
||||||||| |||| ||||| |||||||||||||||||
Sbjct: 958 ttatcatggcttctggatcaatttccaaaatggtatcc 995