Jatropha Genome Database

JcCA0247261.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0247261.10 + phase: 0 /pseudo/partial
         (1927 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011225 conserved hypothetical protein                          220   2e-56

>30190.m011225 conserved hypothetical protein
          Length = 2829

 Score =  220 bits (111), Expect = 2e-56
 Identities = 192/219 (87%)
 Strand = Plus / Plus

                                                                       
Query: 450 taatgagatcaatcttcaagttaacatgaacgaggcaactgaagcatttataaaccagaa 509
           ||||||||| ||||||||||| ||||||| | |||||||||| |||||||||||||||||
Sbjct: 729 taatgagataaatcttcaagtcaacatgagcaaggcaactgaggcatttataaaccagaa 788

                                                                       
Query: 510 gttgattgatggaaaacatcttattgctgatggggcaagtcatcagtctaagaacttctt 569
           ||||||||||||||||||||||  ||  | |||||     || ||||||||  |||||||
Sbjct: 789 gttgattgatggaaaacatctttgtggaggtggggtgtcacaccagtctaaacacttctt 848

                                                                       
Query: 570 ggacgcattgaagatattgaattccaacaaggatttattcataaaactcctacaagaccc 629
           ||| |||||  ||||| | ||||| |||||||| ||||| ||||||||||||||||||||
Sbjct: 849 ggatgcattagagatactaaattctaacaaggacttatttataaaactcctacaagaccc 908

                                                  
Query: 630 caattctctgttggtgaaacacattgaagacttgagaga 668
           ||||||| |||||||||||||||||||||||||||||||
Sbjct: 909 caattctttgttggtgaaacacattgaagacttgagaga 947



 Score =  170 bits (86), Expect = 2e-41
 Identities = 163/188 (86%), Gaps = 3/188 (1%)
 Strand = Plus / Plus

                                                                       
Query: 139 aaaatcacaggagaagatgtgtccattgagcaggagatcaagaagaagattacaactgct 198
           ||||||| ||||||||||||||||||| ||||| |||| ||||||||||||||||| |||
Sbjct: 385 aaaatcaaaggagaagatgtgtccattaagcagcagatgaagaagaagattacaacagct 444

                                                                       
Query: 199 aaagtggaaaatgtacaatctgattctgaacttgttgatgaccgatcaaggaaccataga 258
           ||||||||| |||||||||||  ||||||||||||| |||||| |||||||||||| |||
Sbjct: 445 aaagtggaatatgtacaatctacttctgaacttgttcatgacctatcaaggaaccaaaga 504

                                                                       
Query: 259 aaagcacctaag---tcccagagatctcgccgtttacctatttatggatgttatgatgta 315
           |||||| | |||    | | ||   |||| || |||||||||||||| ||||||||||||
Sbjct: 505 aaagcaaccaagactgctcggaaggctcgtcgcttacctatttatggttgttatgatgta 564

                   
Query: 316 tcaactgt 323
           ||||||||
Sbjct: 565 tcaactgt 572



 Score = 85.7 bits (43), Expect = 9e-16
 Identities = 70/79 (88%)
 Strand = Plus / Plus

                                                                        
Query: 1783 ttttcaagagaggattcacctgtgaagaatcagacatcaacatcttcaatagatgattat 1842
            |||||||||  ||||||||||||| |||||||||||||||||  | || |||||||||||
Sbjct: 2059 ttttcaagaatggattcacctgtggagaatcagacatcaacaattccagtagatgattat 2118

                               
Query: 1843 tcatctagccctctaaaca 1861
            ||||| |||||| ||||||
Sbjct: 2119 tcatcaagccctttaaaca 2137