Jatropha Genome Database

JcCA0237241.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0237241.10 - phase: 1 /partial
         (668 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000424 conserved hypothetical protein                          276   2e-73

>29905.m000424 conserved hypothetical protein
          Length = 1761

 Score =  276 bits (139), Expect = 2e-73
 Identities = 402/491 (81%), Gaps = 9/491 (1%)
 Strand = Plus / Plus

                                                                        
Query: 27   catctattcttgtctgccagtaatccaaagagtcttgaagatgcaaagcgtttggctgaa 86
            ||||||||| ||||||| | |||| |||| ||||||||||||||||||||||||||||||
Sbjct: 727  catctattcctgtctgctaataattcaaaaagtcttgaagatgcaaagcgtttggctgaa 786

                                                                        
Query: 87   aaccttcttgatacaattagtttagagtgcggtgcctccagggtttcatcatccaaggtt 146
            |||||  | |||||| ||||||||||||  |||||||| ||||| |||||    ||| ||
Sbjct: 787  aacctattggatacagttagtttagagtttggtgcctcaagggtctcatcgagtaagatt 846

                                                                        
Query: 147  tataatgctgttccaccaccacagcagttattagctggggttcagaattctgggaatgaa 206
            |||||||||||||| || |||||||||||||||||||| ||||| | |||||||||||| 
Sbjct: 847  tataatgctgttcccccgccacagcagttattagctggtgttcaaagttctgggaatgag 906

                                                                        
Query: 207  aacaaattaaatgcaattccacctgctggtttggcattatccgcaatgagctccacacca 266
             | ||| | ||| |||||||  ||||||||||||| ||||| || ||||||||||| || 
Sbjct: 907  cagaaagtgaatacaattcctgctgctggtttggctttatcagcgatgagctccactccc 966

                                                                        
Query: 267  cctattcctgctacttcagttaaactccacgtgacaa---------attcccaagggacg 317
            | |||||| ||| ||||||||  | || |   |||||          ||| |||||||| 
Sbjct: 967  cttattccagcttcttcagttgcaatctataggacaactcctgtcttttctcaagggacc 1026

                                                                        
Query: 318  gtatatcaacctggaggactgattaactcggggcaacctcaaccgaacttgcttggtcag 377
            || ||||||||||| |||||| | ||||  ||     ||||| ||| |||| ||||||| 
Sbjct: 1027 gtgtatcaacctgggggactggtaaactgtggctctactcaatcgaccttggttggtcat 1086

                                                                        
Query: 378  cctcagccttcagtaagtggaggaacaagctacagtggatatggtgggatatatcctcag 437
            || ||||||| | | | |||||| |||||||| ||||| |||||||||||||||||||||
Sbjct: 1087 ccccagcctttaattaatggagggacaagctatagtgggtatggtgggatatatcctcag 1146

                                                                        
Query: 438  gccacacctttgcaacaagttgctctggcccttagacagtcaacatctccaataacttca 497
            ||||||||||||||||||||||| || |||||||| ||||||||| ||||| | ||||| 
Sbjct: 1147 gccacacctttgcaacaagttgcccttgcccttaggcagtcaacagctccagttacttct 1206

                       
Query: 498  acagttgcacc 508
            ||| |||||||
Sbjct: 1207 acaattgcacc 1217