Jatropha Genome Database
- JcCA0236591.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0236591.10 + phase: 2 /pseudo/partial
(1269 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29889.m003301 phytochrome B, putative 1096 0.0
29693.m002076 phytochrome B, putative 68 1e-10
>29889.m003301 phytochrome B, putative
Length = 3426
Score = 1096 bits (553), Expect = 0.0
Identities = 1016/1169 (86%), Gaps = 1/1169 (0%)
Strand = Plus / Plus
Query: 86 ctcagtcctcgggcaccagcaacttgagggtccacaacaccgagtctgtaagtaaagcaa 145
|||| ||||| || ||||| ||||| |||| ||||||||||| ||| | || |||||||
Sbjct: 80 ctcaatcctcaggtaccagtaacttaagggctcacaacaccgaatctatgagcaaagcaa 139
Query: 146 ttgctcagtacacagtggacgcgcagctccatgcggtttttgaacaatcaggtgagtcgg 205
||||||| |||||||| ||||| ||||| ||||| ||||||||||||||||| | ||| |
Sbjct: 140 ttgctcaatacacagtagacgcacagctgcatgctgtttttgaacaatcaggagggtcag 199
Query: 206 gtaagtcgtttgattactcgcaatcggtgagaaccactaaccagtcagtccctgaacagc 265
|||| || ||||||||||| ||||| |||||||| ||||| ||||| | ||||||| |
Sbjct: 200 gtaaatcttttgattactcacaatcagtgagaacaactaatcagtcgatagctgaacaac 259
Query: 266 aaatcactgcttacctatctaaaatccaacgtggtggccatatccagccttttgggtgca 325
|||||||||||||| |||| ||||| |||||||| || ||||| || ||||||||||| |
Sbjct: 260 aaatcactgcttacttatcaaaaatacaacgtgggggtcatattcaaccttttgggtgta 319
Query: 326 tgatcactgttgatgaaggttcttttagggttactgggtatagcgaaaacgcacgtgaaa 385
||||| | |||||||||| |||||||||||||| || ||||| ||||||||||| |||
Sbjct: 320 tgatcgcagttgatgaagcttcttttagggttattgcatatagtgaaaacgcacgcgaac 379
Query: 386 tgctcggtttaacgcctcaatcagtaccttctcttgaaaaaccagaaatcctttcgattg 445
|||| || |||| |||||| ||||| ||||| ||||||||||| ||||| ||||| ||||
Sbjct: 380 tgcttggcttaatgcctcagtcagttccttcacttgaaaaacctgaaattctttccattg 439
Query: 446 ggactgatgtgcgcacccttttcacgccctcgagtgcggttttgctggaaaaagcatttg 505
|||||||||| || || ||||| || | || ||||| ||||||| ||||| || ||||
Sbjct: 440 ggactgatgttcgtactctttttactcaatctagtgctcttttgcttgaaaaggcttttg 499
Query: 506 gggcaagagaaatcacgttactcaaccctctatggattcactccaagaactcgggaaaac 565
|||| |||||||| || ||| | |||||||| |||||||||||||||||||| |||||||
Sbjct: 500 gggctagagaaattactttattaaaccctctttggattcactccaagaactctggaaaac 559
Query: 566 ccttttacgcgattttgcataggatagatgttgggattgttattgatttggagcctgcta 625
||||||| || |||||||||||||| |||||||||||||| |||||||| || |||||||
Sbjct: 560 ccttttatgcaattttgcataggattgatgttgggattgtcattgatttagaacctgcta 619
Query: 626 ggacggaggaccctgctttatcaatagccggggctgtgcagtcacagaagttagcagttc 685
| || || || ||||||||||| ||||| || ||||| ||||||||||||||||| ||||
Sbjct: 620 gaactgaagatcctgctttatctatagctggtgctgttcagtcacagaagttagctgttc 679
Query: 686 gtgcgatttctcgtttacagtcacttcctggtgggggatattaagctgttgtgtgatact 745
|||| ||||| | ||||||||||||||| |||| | || ||| || ||||||||||||
Sbjct: 680 gtgcaatttcacagttacagtcacttcctagtggag-atgttagacttttgtgtgatact 738
Query: 746 gtggtggactgtgtgagggagcttactgggtatgatagagttatggtttacaagtttcat 805
|| ||||| || ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct: 739 gttgtggagtgcgtgagggagcttactgggtatgatagagtcatggtttataagtttcat 798
Query: 806 gaggatgaacatggtgaggttgtagcagagaacaaaaggtctgatttagaaccttacatt 865
||||||||||||||||||||||| || ||||| ||| | |||||||||||||||| ||
Sbjct: 799 gaggatgaacatggtgaggttgttgcggagaataaacagcctgatttagaaccttatatc 858
Query: 866 ggtttacattatcctgcaactgatatacctcaggcttctaggtttttgtttaagcagagt 925
||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct: 859 ggtttacattatcctgctactgatatacctcaggcgtccaggtttttgtttaagcaaagt 918
Query: 926 agggttagaatgatagtggattgccatgccacacctgtccgtattattcaagatgaagca 985
||||||||||||||||| ||||| ||||| || ||||| |||||||||| |||||||||
Sbjct: 919 agggttagaatgatagttgattgtcatgctactcctgttagtattattcaggatgaagca 978
Query: 986 ctaatgcagcctttgtgcttggttggttcaactcttcgtgcccctcatggttgtcatgct 1045
||||||||||| | || ||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 979 ttaatgcagcctctatgtttggtcggttcaactcttcgtgctcctcatggttgtcatgct 1038
Query: 1046 caatatatggcgaatatgggttcaattgcctcattggcaatggcggtcattattaatgga 1105
|| |||||||| |||||||| |||||||| || |||| ||||| || ||||||||||||
Sbjct: 1039 cagtatatggcaaatatggggtcaattgcttcgctggctatggcagttattattaatgga 1098
Query: 1106 aatgatgaggaagctattggtggaaggaatttgatgaggctttggggtttagttgtttgt 1165
|||||||| || ||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct: 1099 aatgatgatgaggctattggtgggaggagttctatgaggctttggggtttagttgtttgt 1158
Query: 1166 catcacacttctgcaaggagcattccttttccacttcgttatgcttgcgagttcctaatg 1225
|| ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct: 1159 caccacacttctgctaggagcattccatttccacttcgttatgcttgtgagtttctaatg 1218
Query: 1226 caggcctttgggcttcagttgaatatgga 1254
||||||||||| |||||||||||||||||
Sbjct: 1219 caggcctttggacttcagttgaatatgga 1247
>29693.m002076 phytochrome B, putative
Length = 3396
Score = 67.9 bits (34), Expect = 1e-10
Identities = 46/50 (92%)
Strand = Plus / Plus
Query: 1190 ccttttccacttcgttatgcttgcgagttcctaatgcaggcctttgggct 1239
|||||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct: 1120 ccttttccacttcgatatgcctgcgagttcctcatgcaggcttttgggct 1169
Score = 61.9 bits (31), Expect = 9e-09
Identities = 200/255 (78%), Gaps = 1/255 (0%)
Strand = Plus / Plus
Query: 568 ttttacgcgattttgcataggatagatgttgggattgttattgatttggagcctgctagg 627
||||| || |||||||| ||||| ||||| || ||||| ||||||||||||||||| |
Sbjct: 523 ttttatgctattttgcacaggattgatgtgggaattgtaattgatttggagcctgcacga 582
Query: 628 acggaggaccctgctttatcaatagccggggctgtgcagtcacagaagttagcagttcgt 687
| | || |||| | | ||| | || || ||||| ||||||||||| | || ||||||
Sbjct: 583 tctggcgatcctgttctctcacttgctggtgctgtacagtcacagaaacttgctgttcgt 642
Query: 688 gcgatttctcgtttacagtcacttcctggtgggggatattaagctgttgtgtgatactgt 747
||||||||| | | ||||||||||||||||| | ||||| ||||||||||||| ||
Sbjct: 643 gcgatttctagactgcagtcacttcctggtggtg-atattggtatgttgtgtgatacagt 701
Query: 748 ggtggactgtgtgagggagcttactgggtatgatagagttatggtttacaagtttcatga 807
||||| ||| | || |||||||||||||| |||||||| ||||| ||||| ||
Sbjct: 702 tgtggaggatgttcaaaaactcactgggtatgatagggttatggtgtacaaatttcacga 761
Query: 808 ggatgaacatggtga 822
||||| ||||||||
Sbjct: 762 tgatgatcatggtga 776