Jatropha Genome Database
- JcCA0234331.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0234331.10 + phase: 1 /pseudo/partial
(466 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29681.m001336 ubiquitin-protein ligase, putative 228 2e-59
29701.m000599 protein binding protein, putative 58 5e-08
29851.m002394 protein binding protein, putative 56 2e-07
>29681.m001336 ubiquitin-protein ligase, putative
Length = 732
Score = 228 bits (115), Expect = 2e-59
Identities = 166/183 (90%)
Strand = Plus / Plus
Query: 284 ttttgccgagatagtcttaaaagagtcaattctggtgatctttggatctatacagataag 343
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 547 ttttgccgagatagtcttaaaagagtcaattctggtgacctttggatctatacagataag 606
Query: 344 tgtgatactgttgatttatccttaattttgagagaaaattctaagaggcttttcatgtac 403
| |||||||||||||||| |||||||||||||||| |||| ||||||||| |||||||||
Sbjct: 607 tctgatactgttgatttacccttaattttgagagagaattgtaagaggctgttcatgtac 666
Query: 404 attgataagttgcctctcattgttccagattctgtaattgttccttatgattctcacgtt 463
|| || ||||||||||| ||||| || ||| |||||| |||| ||||||||||| |||
Sbjct: 667 atagagaagttgcctcttattgtccctgatcatgtaatcattccctatgattctcatgtt 726
Query: 464 agg 466
|||
Sbjct: 727 agg 729
Score = 224 bits (113), Expect = 4e-58
Identities = 191/217 (88%)
Strand = Plus / Plus
Query: 9 tttccttctataatgcaacttcaaaaaggaatcacagatttggaagataagaaacagaat 68
||||||||| | |||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 295 tttccttctctgttgcaacttcaaagaggaatcaccgatttggaagataagaaacagaag 354
Query: 69 gagatctgtaatatcagatataaaagaaaggatgagttggagaggggtaaactctctgaa 128
||| | |||||||| ||||||| ||||| |||||||||||||| | | ||||||||||
Sbjct: 355 gaggtttgtaatattagatatagaagaagggatgagttggagaaagagagactctctgaa 414
Query: 129 attgacatagaaagggaagaggagtgtgggatttgcatggagattggcagcaaagctgta 188
|||||||||||||| ||||||||||||||||||||| ||||||| |||||| | | ||
Sbjct: 415 attgacatagaaagagaagaggagtgtgggatttgcttggagatgcacagcaaggttata 474
Query: 189 ttgcccaattgcaatcattctttgtgtttgaaatgct 225
|||||||||||||| ||||||||||||||||| ||||
Sbjct: 475 ttgcccaattgcaaccattctttgtgtttgaagtgct 511
>29701.m000599 protein binding protein, putative
Length = 837
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 2 ggtgatatttccttctataatgcaacttcaaaaaggaatca 42
|||||||||||||||| || |||||||||||| ||||||||
Sbjct: 285 ggtgatatttccttctttattgcaacttcaaagaggaatca 325
>29851.m002394 protein binding protein, putative
Length = 744
Score = 56.0 bits (28), Expect = 2e-07
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 267 gatctcagtcatgtcctttttgccgagatagtcttaaaagagtcaattctgg 318
|||| |||||||||||||| ||||| || |||||||||||||| || |||||
Sbjct: 542 gatcacagtcatgtcctttctgccgggacagtcttaaaagagtgaactctgg 593