Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (1236 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014167 5'->3' exoribonuclease, putative                        416   e-115

>30170.m014167 5'->3' exoribonuclease, putative
          Length = 3342

 Score =  416 bits (210), Expect = e-115
 Identities = 433/508 (85%), Gaps = 7/508 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    gatgcttgacatgctttttgtgttatcatctcattctcttgctgagagtatttatttact 60
            |||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct: 2163 gatgtttgacatgctttttgtgttatcatctcactctcttgctgagagtatatatttact 2222

                                                                        
Query: 61   tgataaccactgtaaacaattgacggacaaagaacgagtcaaagtcaaagaacgtattaa 120
            ||||||  ||||||||||||| || |||| |||| | ||  |||| || |||||||||||
Sbjct: 2223 tgataataactgtaaacaattaacagacagagaaagggttgaagttaaggaacgtattaa 2282

                                                                        
Query: 121  tcctgagttgag-------atgaatggttatatatccccttgctctggagatactcaacc 173
            ||||||||||||       ||||||||||||||||| || || ||||||||||| || ||
Sbjct: 2283 tcctgagttgagtgatgggatgaatggttatatatctccatgttctggagatacccaccc 2342

                                                                        
Query: 174  tcctatattcaggtctccagttgtaggcatggaagacattttggacaatgaagtcatatg 233
            |||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||
Sbjct: 2343 tcctatattcaggtctccagttgctggcatggaagacattttggacaatggagtcatatg 2402

                                                                        
Query: 234  tgctgtatacagacttcctgatccacataaacacataactcgaccaccagcgggggttat 293
            |||| ||||||||||||| || |||||||||||  ||||||| ||||| || || |||||
Sbjct: 2403 tgctatatacagacttccggacccacataaacatgtaactcggccacctgctggtgttat 2462

                                                                        
Query: 294  attccctaagaagatggtaaattcgggggatctgaaaccagatccagttttgtggcatga 353
            |||||| |||||||| || |||   |  |||||||| || ||||| ||||| ||||||||
Sbjct: 2463 attcccaaagaagatcgtgaatgttgtagatctgaagcctgatcctgttttatggcatga 2522

                                                                        
Query: 354  agattctggaaggaggccttgggaaagccaaaggcataacccccctggaactatatctgg 413
            ||| |||||  ||| ||||||||||||  | ||||  || ||||||||||| || |||||
Sbjct: 2523 agactctgggcggaagccttgggaaagtgataggcgaaatccccctggaaccatctctgg 2582

                                                                        
Query: 414  acgtcagcttggtgaggtatctcatcgtcttgttatgaatagtttacaattgaaggtaga 473
             ||||||||||| |||| ||| ||||| |||||  | |||||||| ||| ||||||| ||
Sbjct: 2583 tcgtcagcttggggaggcatcacatcgacttgtcgttaatagtttgcaaatgaaggttga 2642

                                        
Query: 474  tcacaatgggtatgccaatcatttgcat 501
             || ||||||||||||||||||||||||
Sbjct: 2643 ccataatgggtatgccaatcatttgcat 2670



 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                  
Query: 724  tatgaaagagagaaccgatcaaatggtcagcattcaag 761
            |||||||||||||||||||||||||| |||||||||||
Sbjct: 2896 tatgaaagagagaaccgatcaaatggacagcattcaag 2933