Jatropha Genome Database

JcCA0230221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0230221.10 - phase: 0 /partial
         (388 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29601.m000451 Exosome complex exonuclease RRP41, putative             529   e-150

>29601.m000451 Exosome complex exonuclease RRP41, putative
          Length = 726

 Score =  529 bits (267), Expect = e-150
 Identities = 345/371 (92%)
 Strand = Plus / Plus

                                                                       
Query: 16  cctgaaggactccgtctagatggtcgacgccccatggaaatgaggcaacttcgagcacag 75
           ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 16  cctgaaggactccgtctggatggtcggcgccccatggaaatgaggcaacttcgagcacag 75

                                                                       
Query: 76  attggtgccgttgccaaagcagatggttctgctgtttttgaaatgggtaatactaaagta 135
           |||||||| ||| ||||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 76  attggtgctgtttccaaagccgatggttctgctgtttttgagatgggtaacactaaagtg 135

                                                                       
Query: 136 attgctgcagtgtatgggccaagagaggttcaaaataggagccaacagatcaatgaccag 195
           ||||||||||| ||||||||||||||||| ||||| || ||||||||||| | ||| |||
Sbjct: 136 attgctgcagtttatgggccaagagaggtccaaaacagaagccaacagattattgatcag 195

                                                                       
Query: 196 gcattggtgcgatgtgagtacagcatggctaattttagtactggagatcgcatgagaaaa 255
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 196 gcattggtgcgatgtgagtacaccatggctaattttagtactggagatcgcatgagaaaa 255

                                                                       
Query: 256 ccgaagggtgacaggcgttcaacagaaatatctctagttattcgtcagacaatggaagca 315
           || ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 256 ccaaagggggacaggcgatcaacagaaatatctctagttattcgtcagacaatggaagaa 315

                                                                       
Query: 316 tgcatattgacacatttgatgcctcgttctcagatagatatctatgtgcaagttctttca 375
           |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||   |
Sbjct: 316 tgcatattgacacacttgatgcctcgatctcagatagatatctatgtacaagttctgcaa 375

                      
Query: 376 gcagatggagg 386
           |||||||||||
Sbjct: 376 gcagatggagg 386