Jatropha Genome Database

JcCA0229911.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0229911.10 + phase: 0 /partial
         (555 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000361 DNA polymerase delta small subunit, putative            648   0.0  

>29613.m000361 DNA polymerase delta small subunit, putative
          Length = 1278

 Score =  648 bits (327), Expect = 0.0
 Identities = 477/527 (90%)
 Strand = Plus / Plus

                                                                        
Query: 16   aatttggctccaaaggatcaatcaagactctcagagccggtcaaagagctagatatcttt 75
            ||||||||| ||||||||||||||||| | || |||||||| |||||||||||||| |||
Sbjct: 730  aatttggcttcaaaggatcaatcaagattatccgagccggtgaaagagctagatatattt 789

                                                                        
Query: 76   ttatctcagattgctgcaggtgtgcctttggatatcatgcctggacccaatgacccagca 135
            || ||||||||||||||| || ||||  ||||||||||||||||| ||||||||||||||
Sbjct: 790  ttgtctcagattgctgcaagtatgccaatggatatcatgcctggatccaatgacccagca 849

                                                                        
Query: 136  aacttttccttaccccagcagtctttgcacagatgccttttcccaggatcagcaacttat 195
            ||||| |||||||| |||||| || ||||||||||||||||||| ||||||||| |||||
Sbjct: 850  aacttctccttacctcagcagcctctgcacagatgccttttccctggatcagcagcttat 909

                                                                        
Query: 196  aatacttttaggtcctgtactaatcctcattgctttgagctcgacaacatcagatttctt 255
            || |||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct: 910  aacacttttaggtcctgtactaatcctcattgctttgagcttgacaatatcaggtttctt 969

                                                                        
Query: 256  ggaacttcaggtcagaatattgatgatcttgagaagtattctgaggcaaaggataagctt 315
            ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 970  ggaacatcaggtcaaaatattgatgatcttgagaagtattcagaggcaaaggataagctt 1029

                                                                        
Query: 316  gaatttttggaaaggacattaaagtggaggcatctggcacctacagctcccaatacactc 375
            |||||| |||||||||||||||| ||||| ||||| ||||| ||||| || ||||| || 
Sbjct: 1030 gaatttatggaaaggacattaaaatggagacatctagcaccaacagcacctaatactctt 1089

                                                                        
Query: 376  ggttgctatcctttcacagatcgggatcctttcctgattgaaagctgccctcatgtatat 435
            ||||| ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct: 1090 ggttgttatcctttcactgatagggatcctttcctgattgagagctgccctcatgtatat 1149

                                                                        
Query: 436  tttgttgctaatcaggataaatatggaactcgcatgttaaagggtccagaagggcagttg 495
            ||||||| ||||||||||||||| ||||||||| | ||||| ||| ||||||||||||||
Sbjct: 1150 tttgttggtaatcaggataaatacggaactcgcctattaaaaggttcagaagggcagttg 1209

                                                           
Query: 496  ataagacttatttccattccaaaatttagtgagactggagttgctgt 542
              ||| || |||||||||||||||||  |||||||||||||||||||
Sbjct: 1210 tcaaggctcatttccattccaaaattctgtgagactggagttgctgt 1256