Jatropha Genome Database

JcCA0224551.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0224551.10 + phase: 0 
         (321 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30076.m004555 NEFA-interacting nuclear protein NIP30, putative        311   1e-84

>30076.m004555 NEFA-interacting nuclear protein NIP30, putative
          Length = 627

 Score =  311 bits (157), Expect = 1e-84
 Identities = 247/277 (89%)
 Strand = Plus / Plus

                                                                       
Query: 34  atgaatttcatatcggaggaacagttggatgaggctaagaaaacaaggggtgagcgggtt 93
           ||||||||| |||||||||||||||| ||||||||||||||| |||| |||||||| |||
Sbjct: 34  atgaatttcgtatcggaggaacagttagatgaggctaagaaatcaagaggtgagcgtgtt 93

                                                                       
Query: 94  gatgacggcactgcgcagagagataggcctctgtatgagattttgaaggagaataaagac 153
           || ||||||||||| |||||||| |||||||| || |||||||| |||||||||||||||
Sbjct: 94  gaagacggcactgcccagagagacaggcctctctacgagattttaaaggagaataaagac 153

                                                                       
Query: 154 aagcgagatgcagaattcaatgagcggttcaagcatagacctcctaaagctttggatgaa 213
           |||  |||||||||||| ||||| ||||| || |||||||||||||||||||||||||||
Sbjct: 154 aagaaagatgcagaatttaatgaacggtttaaacatagacctcctaaagctttggatgaa 213

                                                                       
Query: 214 gatgagactgagtttcttgaaaaattggagatgtcaagaagggaatatgagcagcaaatg 273
           |||||||||||||||||||| ||||| || |||||||| |||||||||||||| ||| ||
Sbjct: 214 gatgagactgagtttcttgataaattagaaatgtcaaggagggaatatgagcaacaagtg 273

                                                
Query: 274 gcagttgatgaagcagaacagctccgaagtttccaag 310
           |||| ||| |||||  |||||||  | ||||||||||
Sbjct: 274 gcagatgaggaagcgcaacagctaaggagtttccaag 310