Jatropha Genome Database

JcCA0224291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0224291.10 + phase: 0 /partial
         (215 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000942 replication factor C / DNA polymerase III gamma-ta...   224   2e-58

>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 1029

 Score =  224 bits (113), Expect = 2e-58
 Identities = 185/209 (88%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgttgtgggtggacaagtacagaccaaaaaccctagatcaggttattgcacacgaagac 60
           ||||||||||| |||||||||||||| ||||||||||| ||| |||| |  || ||||||
Sbjct: 1   atgttgtgggtagacaagtacagacccaaaaccctagaccagattatggttcatgaagac 60

                                                                       
Query: 61  attgcccaaaacctcaagaagctggtcactgaacaagactgtccacatttgcttttctat 120
           |||||||||||||||||||| || || ||||||||||| || || |||||||| ||||||
Sbjct: 61  attgcccaaaacctcaagaaacttgttactgaacaagattgcccgcatttgctattctat 120

                                                                       
Query: 121 ggcccctctggttctggcaagaaaacactaatcatggccctccttcgtcagattttcggt 180
           ||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||| |||
Sbjct: 121 ggcccctctggttctgggaagaaaaccctaatcatggcccttcttcggcagatttttggt 180

                                        
Query: 181 gctagcgctgaaaaggtgaaggtagaaaa 209
            | || ||||||||||||||||| |||||
Sbjct: 181 cccagtgctgaaaaggtgaaggtggaaaa 209