Jatropha Genome Database

JcCA0216521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0216521.10 - phase: 2 /partial/short
         (134 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29662.m000472 Auxin efflux carrier component, putative                 86   6e-17
29816.m000677 Auxin efflux carrier component, putative                 60   3e-09

>29662.m000472 Auxin efflux carrier component, putative
          Length = 1907

 Score = 85.7 bits (43), Expect = 6e-17
 Identities = 67/75 (89%)
 Strand = Plus / Plus

                                                                        
Query: 4    gctcttccccaaggaatcgttccatttgtatttgccaaagaatacaatgtccacgctgac 63
            |||||||||||||| || || |||||||| |||||||| || ||||||||||||||||||
Sbjct: 1774 gctcttccccaagggattgtaccatttgtttttgccaaggagtacaatgtccacgctgac 1833

                           
Query: 64   atacttagcactgcg 78
            ||||| || ||||||
Sbjct: 1834 atactcagtactgcg 1848


>29816.m000677 Auxin efflux carrier component, putative
          Length = 1941

 Score = 60.0 bits (30), Expect = 3e-09
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                        
Query: 13   caaggaatcgttccatttgtatttgccaaagaatacaatgtccacgctgacatacttagc 72
            |||||||| ||||||||||| ||||| ||||| |||||||||||  | | ||| ||||||
Sbjct: 1810 caaggaattgttccatttgtgtttgctaaagagtacaatgtccatccagccattcttagc 1869

                  
Query: 73   actgcg 78
            ||||||
Sbjct: 1870 actgcg 1875