Jatropha Genome Database

JcCA0205491.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0205491.10 + phase: 2 /pseudo/partial
         (282 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27810.m000636 conserved hypothetical protein                          135   2e-31

>27810.m000636 conserved hypothetical protein
          Length = 3165

 Score =  135 bits (68), Expect = 2e-31
 Identities = 181/218 (83%), Gaps = 3/218 (1%)
 Strand = Plus / Plus

                                                                        
Query: 48   ggcaagatatagcaaacaacttgatagaacgccttagtgatgaagaaattgcaattcgtc 107
            |||||||| |||||||||||||| | || ||| | ||||||||||| ||||||||| |||
Sbjct: 1430 ggcaagatttagcaaacaacttgcttgagcgcttaagtgatgaagatattgcaatttgtc 1489

                                                                        
Query: 108  accaagcatcaaaattgatttcaatgatagatccatcattagttatgcccgccttagttc 167
            | |||||||| |  ||| ||||| ||||||| ||||||||||||||||| |||||  |  
Sbjct: 1490 aacaagcatctagcttgctttcagtgatagacccatcattagttatgcctgccttgataa 1549

                                                                        
Query: 168  accttctgtactcatcagatgaaggatt---gtcatatgctagtactgctttcactgcaa 224
             |||| | |||||||||||| |||||||   |||||||| ||||||||| || | || ||
Sbjct: 1550 gccttatctactcatcagataaaggattgcagtcatatggtagtactgcctttattggaa 1609

                                                  
Query: 225  tgctccaatatcataaccagaaacctgaagttatatgt 262
            ||||  || ||||||||||| | |||||||||||||||
Sbjct: 1610 tgcttaaacatcataaccagcagcctgaagttatatgt 1647