Jatropha Genome Database

JcCA0199381.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0199381.10 + phase: 0 /pseudo/partial
         (444 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29955.m001175 conserved hypothetical protein                          492   e-139

>29955.m001175 conserved hypothetical protein
          Length = 1194

 Score =  492 bits (248), Expect = e-139
 Identities = 392/440 (89%)
 Strand = Plus / Plus

                                                                        
Query: 1    gagtgggctcataagcagtacattgcaaaacatcaacaagggccttcgcaacagtggggg 60
            |||||||||||||||||||| ||||||||||||||||| || ||||| || |||||||||
Sbjct: 748  gagtgggctcataagcagtatattgcaaaacatcaacagggaccttcacagcagtggggg 807

                                                                        
Query: 61   aatttctattactttaggatgaagaacataagtgacatatattttatcggaggctttggc 120
            |||||||| ||||| |||||| |||| |||||||||||||||||||| ||||| ||||||
Sbjct: 808  aatttctactacttcaggatgcagaatataagtgacatatattttattggaggttttggc 867

                                                                        
Query: 121  actgttgcttgggttgatgttaaggagtatgaggcccttaagcctgataaaattgcagtt 180
            |||||||||||||||||||| ||||| |||||||||||| ||||||| ||||||||||||
Sbjct: 868  actgttgcttgggttgatgtcaaggaatatgaggcccttcagcctgacaaaattgcagtt 927

                                                                        
Query: 181  gatggaggcgagcaaaatctcaaggaacttaatgcaatcttctcaaagccccttaaagag 240
            ||||| |  ||||| || ||||||||||| |||||||||||||| ||||||||||| || 
Sbjct: 928  gatggggaggagcacaacctcaaggaactcaatgcaatcttctccaagccccttaaggaa 987

                                                                        
Query: 241  ctcttgtccaccgaagcagaaatagacgatgctgctcttatatcaatagacagcaaagga 300
            || |||||||| ||| ||||| |||| ||||||||||| ||||||||||| |||||||||
Sbjct: 988  cttttgtccactgaaacagaagtagatgatgctgctctcatatcaatagatagcaaagga 1047

                                                                        
Query: 301  atcgatatccgggtccgtcaaggtgcacagttcaacatacagaggctatcatttgaagaa 360
            |  ||||| ||||||||||||||||| ||||| ||  |||||||| ||||||||||||| 
Sbjct: 1048 actgatattcgggtccgtcaaggtgctcagtttaatgtacagaggttatcatttgaagag 1107

                                                                        
Query: 361  gggcatgcggttgaaacattagaataagccaaggctgctctatggaaactaataaacaaa 420
            |||||||| ||||||||||||||  |||||||| |||||||||||||||||||||| |||
Sbjct: 1108 gggcatgctgttgaaacattagaggaagccaagtctgctctatggaaactaataaaaaaa 1167

                                
Query: 421  ggctaagttcacaatttgca 440
            ||  |||| |||||||||||
Sbjct: 1168 ggtcaagtgcacaatttgca 1187