Jatropha Genome Database

JcCA0198981.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0198981.10 - phase: 1 /partial
         (494 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29792.m000620 pentatricopeptide repeat-containing protein, putative   408   e-113

>29792.m000620 pentatricopeptide repeat-containing protein, putative
          Length = 1665

 Score =  408 bits (206), Expect = e-113
 Identities = 374/430 (86%)
 Strand = Plus / Plus

                                                                        
Query: 18   gatgtggtgacattcactatacttgtagaagcttttcttagagaaggtagttctgatata 77
            ||||| |||||||| |||||| || || ||||||||||| || |||| |||| | |||||
Sbjct: 1075 gatgtagtgacatttactatatttataaaagcttttcttggaaaaggcagttttaatata 1134

                                                                        
Query: 78   gcaaagaagcttcttgatcagatgacaaaaatgggcatttctcctgatcgtatattttat 137
            ||||| ||||| ||||||||||||||| |||||||  |||| |||||| |||||||||||
Sbjct: 1135 gcaaaaaagctgcttgatcagatgacagaaatgggtctttcacctgattgtatattttat 1194

                                                                        
Query: 138  acaactattattggtcacttatgcaagagtgggaaaataggacttgctcatacaattttt 197
            || |||||||||| ||| |||||||||||||||||| ||| | | |||||  ||||||| 
Sbjct: 1195 actactattattgatcatttatgcaagagtgggaaagtagaaatggctcactcaattttc 1254

                                                                        
Query: 198  tgtgatatggtagaacagggaattccccctgatgtaatttcatgtaatgccctcataaat 257
            |||||||||||||||||||||||| | |||||||| ||||||| |||||| || ||||||
Sbjct: 1255 tgtgatatggtagaacagggaatttcgcctgatgtgatttcatttaatgctcttataaat 1314

                                                                        
Query: 258  gggttttgcaaatcctttagagtaagtgaagctatgcaattgtacgaagaaatgcaaagt 317
            || |||||||| | || ||||||||||||||||||||| || || ||||||||||| | |
Sbjct: 1315 ggtttttgcaagtgctctagagtaagtgaagctatgcatttatatgaagaaatgcagaat 1374

                                                                        
Query: 318  agaggaccctatcctgatgaagtaacatataatttgatcattagagggcttatagtggaa 377
            |||||| | ||||| |||||||||||||| || ||||||||| ||||||| |||| ||||
Sbjct: 1375 agaggatcttatccagatgaagtaacatacaaattgatcattggagggctcatagaggaa 1434

                                                                        
Query: 378  aagaagctttcagttgctagtagggtgtggggtcagatgatggagaagggctttactctt 437
            |||||| ||||| ||||| ||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 1435 aagaagatttcaattgcttgtatggtgtggggtcagatgatggataagggctttactctt 1494

                      
Query: 438  gacagagcta 447
            || |||||||
Sbjct: 1495 gatagagcta 1504