Jatropha Genome Database

JcCA0192731.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0192731.20 + phase: 0 /partial
         (629 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28256.m000140 Protein AFR, putative                                   103   1e-21

>28256.m000140 Protein AFR, putative
          Length = 1113

 Score =  103 bits (52), Expect = 1e-21
 Identities = 181/224 (80%)
 Strand = Plus / Plus

                                                                       
Query: 403 tcacacgtatggacactcgactgccggttccactcgtgggaatcctttcccaatatgagt 462
           ||||||||||||||||| |||||| ||||||||  |||||||  |  |||||| ||||||
Sbjct: 415 tcacacgtatggacactggactgcaggttccacatgtgggaactcagtcccaagatgagt 474

                                                                       
Query: 463 atttcccgtgaattcgccgctgccggcgtggtggatgggaaaatttacgtcatcggtggg 522
           |||||  | || || || ||||| || || ||| |||  |||||||| || || ||||||
Sbjct: 475 atttctagagagtttgctgctgctggtgttgtgaatgataaaatttatgtgattggtggg 534

                                                                       
Query: 523 tgtgtggttgatacgtgggcccgatcgaagaactgggcggaagtttttgatccaaagatt 582
           || || |||||||| |  |||||||| ||| |||||||||| |||||||| ||||| |||
Sbjct: 535 tgcgttgttgatactttcgcccgatccaagtactgggcggaggtttttgacccaaatatt 594

                                                       
Query: 583 cgaacttgggaatcagtggatagtgcgagagagaatatattgcg 626
             |||||||||| || | |||||||  |||||| || |||||||
Sbjct: 595 gaaacttgggaagcaattgatagtgtaagagagcatctattgcg 638



 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 42/46 (91%)
 Strand = Plus / Plus

                                                         
Query: 94  cctcggtctcaccacccactgctttcattagtctccaaacctttcc 139
           ||||| |||||||||||||| ||||| |||||||||||| ||||||
Sbjct: 106 cctcgttctcaccacccacttctttctttagtctccaaatctttcc 151