Jatropha Genome Database
- JcCA0155101.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0155101.20 - phase: 0
(462 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
27524.m000290 Ribulose bisphosphate carboxylase small chain, chl... 303 5e-82
29974.m000232 Ribulose bisphosphate carboxylase small chain, chl... 161 4e-39
30167.m000889 Ribulose bisphosphate carboxylase small chain 1B, ... 161 4e-39
>27524.m000290 Ribulose bisphosphate carboxylase small chain,
chloroplast precursor, putative
Length = 543
Score = 303 bits (153), Expect = 5e-82
Identities = 303/353 (85%)
Strand = Plus / Plus
Query: 106 tgcatgcaggtgtggcctccagttggaaagaagttctttgagactctctcatacctgcca 165
|||||||||||||||||||| ||||| |||||| ||||||||||| || || || |||
Sbjct: 169 tgcatgcaggtgtggcctcccgttgggaagaagaagtttgagactctttcttatctccca 228
Query: 166 cctctctcccaagatcaattagccaaggaggttcattaccttcttcgcatggatagggtt 225
||||| || |||| ||||| ||||| ||| | |||||||| ||||||| |||||
Sbjct: 229 cctctgtcagaagagtccttagctaaggaagttgactaccttctccgcatgggatgggtt 288
Query: 226 ccttgcttggaatttgagttggagcacggatttgtttaccgtgagaaccacagatcccct 285
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct: 289 ccttgcttggaatttgagttggagcacggattcgtgtaccgtgagaaccacagatcacca 348
Query: 286 ggttactacgacggacgctactggacaatgtggaagctccccatgtttggttgcacagat 345
|| |||||||| ||||||| |||||||||||||||||| ||||||||||| |||||||||
Sbjct: 349 gggtactacgatggacgctgctggacaatgtggaagctgcccatgtttgggtgcacagat 408
Query: 346 tcagcccaagttcttaaggagctagaagaagctaaaacagcttacccaaattcattcatt 405
||| | || ||| | |||||||| ||||| || || | || ||||| |||||||| ||
Sbjct: 409 tcatcgcaggttttgaaggagctggaagaggccaagaaggcgtaccctaattcatttatc 468
Query: 406 agaattattggatttgacaacaagcgccaagtgcagtgcatcagtttcattgc 458
|||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 469 agaattattggatttgacaacaagcgccaagttcaatgcatcagtttcattgc 521
>29974.m000232 Ribulose bisphosphate carboxylase small chain,
chloroplast precursor, putative
Length = 558
Score = 161 bits (81), Expect = 4e-39
Identities = 366/461 (79%)
Strand = Plus / Plus
Query: 1 atggttgcaccattcacaggcctcaagtctacttcagcattctcagtaacccgcaaaaac 60
||||||||||||||||| || |||||||| || || || ||| |||| |||||||| | |
Sbjct: 70 atggttgcaccattcactggtctcaagtccacctctgctttcccagtcacccgcaagacc 129
Query: 61 aatactgacataacctctatatccagcaaaggtggaagagttcagtgcatgcaggtgtgg 120
|| |||||||| ||| || | | | ||| || || ||||| |||||||||||||| |||
Sbjct: 130 aacactgacatcaccactttggctaacaatggcggcagagtccagtgcatgcaggtatgg 189
Query: 121 cctccagttggaaagaagttctttgagactctctcatacctgccacctctctcccaagat 180
|||||| |||| |||||| || ||||||||||||||||| || || ||| ||
Sbjct: 190 cctccacttgggaagaagaagttcgagactctctcataccttcctgaccttacccgtgag 249
Query: 181 caattagccaaggaggttcattaccttcttcgcatggatagggttccttgcttggaattt 240
||||| || ||||| || | |||||||| |||| || ||||||||||| | || ||
Sbjct: 250 caattggctaaggaagtcgaataccttctccgcaagggatgggttccttgcctagagttc 309
Query: 241 gagttggagcacggatttgtttaccgtgagaaccacagatcccctggttactacgacgga 300
||||||||||||||||| || |||||||| ||| ||| ||||| || |||||||| |||
Sbjct: 310 gagttggagcacggattcgtgtaccgtgaaaacgccaggtccccaggatactacgatgga 369
Query: 301 cgctactggacaatgtggaagctccccatgtttggttgcacagattcagcccaagttctt 360
||||||||||| ||||||||||| ||||||||||| |||| || ||| || || |
Sbjct: 370 cgctactggaccatgtggaagctgcccatgtttggctgcagtgacgcagttcaggtgttg 429
Query: 361 aaggagctagaagaagctaaaacagcttacccaaattcattcattagaattattggattt 420
|||||||| || ||||| | | ||||||||| ||||| ||| |||| || || || ||
Sbjct: 430 aaggagctcgatgaagccattaaagcttaccccaattccttcgttaggatcatcggtttc 489
Query: 421 gacaacaagcgccaagtgcagtgcatcagtttcattgccta 461
||||| ||||||||||| ||||||||||||||||||||
Sbjct: 490 gacaatgtccgccaagtgcaatgcatcagtttcattgccta 530
>30167.m000889 Ribulose bisphosphate carboxylase small chain 1B,
chloroplast precursor, putative
Length = 546
Score = 161 bits (81), Expect = 4e-39
Identities = 303/377 (80%)
Strand = Plus / Plus
Query: 85 agcaaaggtggaagagttcagtgcatgcaggtgtggcctccagttggaaagaagttcttt 144
||||| ||||||||||| || ||||||||||| ||||||||| ||||||||||| ||
Sbjct: 145 agcaatggtggaagagtgcaatgcatgcaggtctggcctccacttggaaagaagaagttc 204
Query: 145 gagactctctcatacctgccacctctctcccaagatcaattagccaaggaggttcattac 204
|||||||| || ||||||||| ||| | | || ||||| || ||||| || |||||
Sbjct: 205 gagactctttcttacctgccagatctaactgatgaacaattggctaaggaagtagattac 264
Query: 205 cttcttcgcatggatagggttccttgcttggaatttgagttggagcacggatttgtttac 264
|||||||||| || || | ||||| ||||| || |||||||| ||||| ||||| |||
Sbjct: 265 cttcttcgcaagggatggatcccttgtttggagttcgagttggaacacggctttgtctac 324
Query: 265 cgtgagaaccacagatcccctggttactacgacggacgctactggacaatgtggaagctc 324
|||||||||||||| || || || |||||||| || ||||||||||| |||||||||||
Sbjct: 325 cgtgagaaccacaggtcacccgggtactacgatggtcgctactggaccatgtggaagctg 384
Query: 325 cccatgtttggttgcacagattcagcccaagttcttaaggagctagaagaagctaaaaca 384
||||||||||| ||| | || || | || || | ||||| || || || || || | |
Sbjct: 385 cccatgtttggatgctctgactccactcaggtgttgaaggaacttgatgaggcaaagaaa 444
Query: 385 gcttacccaaattcattcattagaattattggatttgacaacaagcgccaagtgcagtgc 444
||||| || || ||||| || ||||||||||||| |||||| || |||||||| |||
Sbjct: 445 gcttatcctaactcatttatccgaattattggattcgacaaccgtcgtcaagtgcaatgc 504
Query: 445 atcagtttcattgccta 461
|||||||||||||||||
Sbjct: 505 atcagtttcattgccta 521