Jatropha Genome Database

JcCA0155011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155011.10 - phase: 2 /partial
         (331 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m010931 conserved hypothetical protein                          285   8e-77
29929.m004658 conserved hypothetical protein                          161   3e-39

>30190.m010931 conserved hypothetical protein
          Length = 216

 Score =  285 bits (144), Expect = 8e-77
 Identities = 195/212 (91%)
 Strand = Plus / Plus

                                                                       
Query: 119 atggaacttttaagggaaaggctcatagagtgtggatggaaagatgaaatgaaagctctt 178
           |||||||||||||| ||||| || |||||||| ||||||||||| ||||||||||| || 
Sbjct: 1   atggaacttttaagagaaagacttatagagtgcggatggaaagacgaaatgaaagcactc 60

                                                                       
Query: 179 tgcagggcatttataaagaagaaagggaggaacaatgtcactgtggatgaccttgtacat 238
           |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 61  tgcagggcatttataaagaagaaagggaggaacaatgttactgtagatgaccttgtacat 120

                                                                       
Query: 239 gttattacccccaagggcagagcctctattcctgattccataaaggctgagctgttacaa 298
           || ||||| || |||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct: 121 gtaattactcctaagggcagagcctccatccctgattccataaaggctgagctgttgcaa 180

                                           
Query: 299 agaattcgtgcttttcttgttcaagctgctgt 330
           ||||| ||| ||||||||||||||||||||||
Sbjct: 181 agaatccgtacttttcttgttcaagctgctgt 212


>29929.m004658 conserved hypothetical protein
          Length = 342

 Score =  161 bits (81), Expect = 3e-39
 Identities = 168/197 (85%)
 Strand = Plus / Plus

                                                                       
Query: 65  cttcaagaaatcatcaacattaagttgattgagagtggagaaaaggagcgattgatggaa 124
           ||||||||  ||||||| |  ||||| |||||||| ||||| || ||| |||| | ||| 
Sbjct: 85  cttcaagacgtcatcaatagcaagttaattgagagcggagagaaagagagattaaaggag 144

                                                                       
Query: 125 cttttaagggaaaggctcatagagtgtggatggaaagatgaaatgaaagctctttgcagg 184
           ||||| ||||||||||||||||| ||||| ||||  ||||||||||||| ||||||||||
Sbjct: 145 cttttgagggaaaggctcatagattgtggttggagtgatgaaatgaaagatctttgcagg 204

                                                                       
Query: 185 gcatttataaagaagaaagggaggaacaatgtcactgtggatgaccttgtacatgttatt 244
           || ||||| | ||||||||| ||||||||||| || |||||||||||||||||||| |||
Sbjct: 205 gcttttatgaggaagaaaggaaggaacaatgtaacagtggatgaccttgtacatgtcatt 264

                            
Query: 245 acccccaagggcagagc 261
           || || || ||||||||
Sbjct: 265 actccaaaaggcagagc 281