Jatropha Genome Database

JcCA0154851.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154851.30 + phase: 0 /partial
         (336 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003393 nuclease, putative                                      222   1e-57
59505.m000053 nuclease, putative                                       64   6e-10

>29822.m003393 nuclease, putative
          Length = 768

 Score =  222 bits (112), Expect = 1e-57
 Identities = 244/288 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggacgagaaagatgctttttacgttgtgcggaaaggagatattgttggcatttat 60
           |||||||| |||||||| |  ||||||||||| |||||||||||| ||||||||||||||
Sbjct: 1   atggaggaagagaaagacgtattttacgttgtacggaaaggagatgttgttggcatttat 60

                                                                       
Query: 61  aaaagcttaagtgattgtcaagctcaagctggatcatcagtatgtgatccttctgtaact 120
           ||||||||||| ||||| |||||||||| |||||| || || ||| |||||||||| | |
Sbjct: 61  aaaagcttaagagattgccaagctcaagttggatcttctgtgtgtaatccttctgtgagt 120

                                                                       
Query: 121 gtgttcaaggggtatggtttgcctaaggaagctgaggagcacctactctcgcatgggctc 180
           ||||||||||| ||||||||| ||||||| ||||||||  ||||  |||| |||||| | 
Sbjct: 121 gtgttcaagggatatggtttggctaaggatgctgaggactacctcgtctcacatgggatt 180

                                                                       
Query: 181 aagaatgctacctattctatccatgctgttgatgttcaaaaggatctttttggtaaaatt 240
           ||  ||||| | | |||||| ||||||  ||||||||||   ||||||||||| ||| ||
Sbjct: 181 aaagatgctgcgttttctattcatgctactgatgttcaacctgatctttttggcaaactt 240

                                                           
Query: 241 gttccctgcccttttcagcaaccgaattcttctggaggaaaagcatta 288
           ||||| |||||||||||||||||   || ||||| |||||||||||||
Sbjct: 241 gttccttgcccttttcagcaaccagctttttctgaaggaaaagcatta 288


>59505.m000053 nuclease, putative
          Length = 789

 Score = 63.9 bits (32), Expect = 6e-10
 Identities = 86/104 (82%)
 Strand = Plus / Plus

                                                                       
Query: 13  aaagatgctttttacgttgtgcggaaaggagatattgttggcatttataaaagcttaagt 72
           ||||||||||| |  |||||| ||||||| ||  |||||||  ||||||| || || | |
Sbjct: 13  aaagatgctttctttgttgtgaggaaaggtgacgttgttggtgtttataagagtttcact 72

                                                       
Query: 73  gattgtcaagctcaagctggatcatcagtatgtgatccttctgt 116
           |||||||||||||||| ||| || || |||||||||||| ||||
Sbjct: 73  gattgtcaagctcaagttggttcgtcggtatgtgatcctcctgt 116