Jatropha Genome Database

JcCA0154801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154801.10 + phase: 0 
         (597 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007263 DNA binding protein, putative                           573   e-163

>30131.m007263 DNA binding protein, putative
          Length = 888

 Score =  573 bits (289), Expect = e-163
 Identities = 458/516 (88%), Gaps = 15/516 (2%)
 Strand = Plus / Plus

                                                                       
Query: 78  gttatttcttcttggtttggacaaatatgggaaaggtgactggcgaagtatttccagaaa 137
           |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 384 gttatttcttcttggtttggacaagtatggaaaaggtgattggcgaagtatttccagaaa 443

                                                                       
Query: 138 ctttgttgtgacaaggacacctacgcaagtggcaagccatgcacaaaaatatttcattcg 197
           |||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 444 ctttgtagtgacaagaacacctacgcaagtggcaagccatgcacaaaaatattttattcg 503

                                                                       
Query: 198 tttgaactcgatgaacaaagataggaggcgttccagcattcatgatatcaccagtgttgg 257
           ||||||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct: 504 tttgaactcaatgaacaaagatagaaggcggtccagcatccatgatatcaccagtgttgg 563

                                                                       
Query: 258 caatggagatatttcagcgccacaaggaccaataactggtcaaacaaatggttctgctgc 317
           |||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||| 
Sbjct: 564 caatggagatatttcagcaccacaaggaccgataactggccaaacaaatggttctgctgg 623

                                                                       
Query: 318 aggaggttcctctggtaaagctgctaaacaaccccctcaacaccctactggacctccagg 377
            ||||||||  |||| || ||  | ||||| ||||||||||||||| ||||| | |||||
Sbjct: 624 tggaggttctgctggcaaggcaacgaaacatccccctcaacaccctgctggatccccagg 683

                                                                       
Query: 378 agttggtgtttatggtcctccgactatagggcaacctataggaggtccccttgtctcagc 437
            ||||||||||||||| |||| || ||||||||||| || ||||| |||||||| |||||
Sbjct: 684 tgttggtgtttatggttctccaacaatagggcaaccgattggaggcccccttgtttcagc 743

                                                                       
Query: 438 agttggcacccctgtgaatcttcctgcccctgcacacatggcttatggcgttagagctcc 497
           |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 744 agttggtacccctgtgaatcttcctgcccctgcacacatggcttatggcatcagagctcc 803

                                                                       
Query: 498 tgtaccaggaacagtaccgggagctgtggttcctggtgcaccaatgatgaacatgggtcc 557
            ||||||||||||            || ||||||||||||||    ||||||||||||||
Sbjct: 804 agtaccaggaaca------------gttgttcctggtgcacc---tatgaacatgggtcc 848

                                               
Query: 558 tatggcatatccaatgccaccgacaactgctcatag 593
           ||||||||||||||||||||| ||||| || |||||
Sbjct: 849 tatggcatatccaatgccacccacaaccgcgcatag 884