Jatropha Genome Database

JcCA0154771.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154771.20 - phase: 0 
         (528 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008674 trafficking protein particle complex subunit 6b, p...   484   e-136

>30128.m008674 trafficking protein particle complex subunit 6b,
           putative
          Length = 528

 Score =  484 bits (244), Expect = e-136
 Identities = 457/528 (86%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggcagagaagtgtcagagagttgcgttgatagcttactgacggagatggtgtcatca 60
           ||||| ||||||||||||||||||||  |||||||  |||| || || ||||| ||||||
Sbjct: 1   atgggaagagaagtgtcagagagttgtattgatagtctactcaccgaaatggtatcatca 60

                                                                       
Query: 61  tactgcaataggttcgacgctaataaacctgagctcgccggccggcggatcgaggctatt 120
           ||||||||| | ||||| || ||||||||||||||||| ||||| ||||||||||| |||
Sbjct: 61  tactgcaatcgcttcgatgccaataaacctgagctcgctggccgtcggatcgaggccatt 120

                                                                       
Query: 121 ggctatcaggtcggccaccagctagccgaacggtatactatggagcggccgagatttagt 180
           |||||||||||||| || ||||| |||||| |||||||||||||||| ||| | ||||||
Sbjct: 121 ggctatcaggtcggtcatcagctcgccgaaaggtatactatggagcgaccgcgttttagt 180

                                                                       
Query: 181 gatcatctagaggcaataaagttcatttgcaaggacttttggtctgaggtctttaagaag 240
           || |||||||||||||||||||| ||||| || || || ||||||||||| || ||||||
Sbjct: 181 gaccatctagaggcaataaagtttatttgtaaagatttctggtctgaggttttcaagaag 240

                                                                       
Query: 241 cagattgacaacttgaagacaaatcatagaggtacctttgtactgcaagataataggttt 300
           ||||| || |||||||||||||||||||||||||| |||||| |||||||||||| ||||
Sbjct: 241 cagatagataacttgaagacaaatcatagaggtacatttgtattgcaagataataagttt 300

                                                                       
Query: 301 cgctggcttgcacgaatgtcagttgatccaactattgaaagtggaggagcatcacaagat 360
           || ||||||||||| |||||  |||||||| | ||||||| |   |||  ||||||||||
Sbjct: 301 cggtggcttgcacgcatgtctattgatccatcaattgaaaatattggattatcacaagat 360

                                                                       
Query: 361 ccttctgccttggctgaaaataaggctacccaagcaatgagcatgcatctctatttccct 420
           |||||||  ||||  ||||  ||| || | ||||||||||| |||||||| ||||| || 
Sbjct: 361 ccttctgttttggaggaaagcaagtctgctcaagcaatgagtatgcatctttattttcca 420

                                                                       
Query: 421 tgtggaatcataaggggagctctttcaaacttagggatcccttgcgcagtttctgctgac 480
           ||||| |||||||| ||||||||||| ||||||||||||||||| || ||||||||||| 
Sbjct: 421 tgtgggatcataagaggagctctttctaacttagggatcccttgtgcggtttctgctgat 480

                                                           
Query: 481 atatccaatcttccggcatgttcatttgtggttcggataaaggcttga 528
           |||||||  ||||||||||||||||||||||| || ||||||||||||
Sbjct: 481 atatccagccttccggcatgttcatttgtggtccgtataaaggcttga 528