Jatropha Genome Database

JcCA0154771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154771.10 - phase: 0 /pseudo
         (1020 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008678 Protein FRIGIDA, putative                                80   3e-14
30128.m008679 conserved hypothetical protein                           70   3e-11

>30128.m008678 Protein FRIGIDA, putative
          Length = 2151

 Score = 79.8 bits (40), Expect = 3e-14
 Identities = 205/260 (78%)
 Strand = Plus / Plus

                                                                        
Query: 722  ttattcaaaaacttatcagcaagaagcagcatattgaggccattggaattatccatgcct 781
            |||||||||| ||||| |  ||||||||||| ||||| |||||| || ||||  |||  |
Sbjct: 1262 ttattcaaaatcttattaaaaagaagcagcacattgaagccattagagttatttatgggt 1321

                                                                        
Query: 782  ttaagcttgctaataagttcccacctgtacttttattgaaagattacttggacaattcta 841
            |  |||| |  ||| ||| ||||||||||| ||| ||||||||||||||| |    || |
Sbjct: 1322 tcgagctggtcaatgagtacccacctgtacctttgttgaaagattacttgcattgctcaa 1381

                                                                        
Query: 842  agattgctgccagaagaattagaaagggaaaaagatcacttgaagggcagattgaggcca 901
            ||| |||||||| |||||| ||||||| | | |  ||| || |||| |||||||||||||
Sbjct: 1382 agaatgctgccaaaagaatgagaaaggcagacaactcaattaaaggacagattgaggcca 1441

                                                                        
Query: 902  gggagaaaagaatagctgatgtgaaatgtgcactaagatgcattggaaactacaatattg 961
               | |||||| |||| ||| |||| |||||| |||| ||||||  | ||||||| ||||
Sbjct: 1442 caaacaaaagagtagcagatctgaagtgtgcattaagctgcattcaagactacaagattg 1501

                                
Query: 962  agtatggaccttcacttggg 981
            | ||||| || |||||||||
Sbjct: 1502 aatatggtccctcacttggg 1521


>30128.m008679 conserved hypothetical protein
          Length = 522

 Score = 69.9 bits (35), Expect = 3e-11
 Identities = 89/107 (83%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggaggacaagatttcttctgagttaaaactcaccgagttacataaacaaaactttcgc 60
           |||||||| | |||||| ||| |||| ||||||| |||||||  || |||||||||||||
Sbjct: 1   atggaggagacgatttcctctaagttgaaactcagcgagttaagtagacaaaactttcgc 60

                                                          
Query: 61  caaacgcttgatcaacttcacgacagcgcttcttcgattctcttgct 107
           |||||  |  |||| ||||| ||  |||||||||| |||||||||||
Sbjct: 61  caaacaatcaatcagcttcatgatcgcgcttcttctattctcttgct 107