Jatropha Genome Database

JcCA0154641.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154641.10 - phase: 0 
         (390 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29732.m000318 conserved hypothetical protein                           82   3e-15

>29732.m000318 conserved hypothetical protein
          Length = 1107

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 161/201 (80%)
 Strand = Plus / Plus

                                                                       
Query: 49  tacgacgttgagtaccgcgcaatcgcagacgacgcatggtactccgtccgtacagtgctt 108
           |||||||| |||||||| ||||| || |||||||||||||||   |||||||||||  | 
Sbjct: 52  tacgacgtcgagtaccgtgcaatagccgacgacgcatggtacagtgtccgtacagttgta 111

                                                                       
Query: 109 aacggggagaaactgacggtgaagtacgacaacttcagcgatgaaaacgacagcattttc 168
            | || |||| ||||| | | |||||||| |||||| |||||||| |||||||| | || 
Sbjct: 112 gaaggagagacactgaggattaagtacgaaaacttcggcgatgaacacgacagcgtcttt 171

                                                                       
Query: 169 gagccgcaaaatttcaagtctgtagccgagattgaggacttcgagaagcggtttagacct 228
           ||||| ||||| || |||| || ||  |||||||||   || ||||||||||| || || 
Sbjct: 172 gagccacaaaactttaagtgtgcagaagagattgagatatttgagaagcggttcaggccg 231

                                
Query: 229 atttcgattcagttgcaggac 249
            |||| | |||||||||||||
Sbjct: 232 ctttccaatcagttgcaggac 252