Jatropha Genome Database

JcCA0154561.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154561.10 + phase: 0 
         (603 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006219 conserved hypothetical protein                          113   1e-24

>29908.m006219 conserved hypothetical protein
          Length = 600

 Score =  113 bits (57), Expect = 1e-24
 Identities = 125/147 (85%), Gaps = 3/147 (2%)
 Strand = Plus / Plus

                                                                       
Query: 52  acattcttgcctatgttatgttcaagaccatctatcaaagatgtttgtgttcccaacaaa 111
           ||||| |||||||||||||||||||||||||| || ||||||||   | |||||||   |
Sbjct: 52  acatttttgcctatgttatgttcaagaccatccattaaagatgtggctcttcccaa---a 108

                                                                       
Query: 112 ttggaagatagatctatgtccttctctagtgaacctttatcgccaaagattggttgcatg 171
            | |||||| |||| ||||| || |||||||| ||||||||||||||||| || ||||||
Sbjct: 109 ctagaagatcgatccatgtctttatctagtgaccctttatcgccaaagatcgggtgcatg 168

                                      
Query: 172 ggtcaggtcaagaaacacaacaagata 198
           || || ||||||| |||||||||||||
Sbjct: 169 ggccaagtcaagagacacaacaagata 195



 Score =  107 bits (54), Expect = 8e-23
 Identities = 135/162 (83%)
 Strand = Plus / Plus

                                                                       
Query: 442 atggatcctcctttgcctgttatcaaaaaagtgcataagccaaatggagcaggagaagaa 501
           ||||| |||||||||||||| ||||| |||||||||||  ||  ||  | ||  |||| |
Sbjct: 439 atggaccctcctttgcctgtgatcaagaaagtgcataaagcagctgatggagaggaagca 498

                                                                       
Query: 502 gaaactctgtggaagagaagatctggtggggttccactgaaaaatttgcagttgaaacag 561
           || ||| | |||||||| || ||||||||| || || |||||||||||||| || |||||
Sbjct: 499 gatactatttggaagaggaggtctggtgggcttgcattgaaaaatttgcagctgcaacag 558

                                                     
Query: 562 attcaacttaatagacaaaattttgcaccaactactgtttga 603
           |||||||||| |||||| ||  ||||||||||||||||||||
Sbjct: 559 attcaacttagtagacataaccttgcaccaactactgtttga 600