Jatropha Genome Database

JcCA0154411.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154411.40 - phase: 2 /pseudo/partial
         (370 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000481 gaba(A) receptor-associated protein, putative           163   9e-40
30064.m000482 gaba(A) receptor-associated protein, putative           125   2e-28

>30064.m000481 gaba(A) receptor-associated protein, putative
          Length = 363

 Score =  163 bits (82), Expect = 9e-40
 Identities = 109/118 (92%)
 Strand = Plus / Minus

                                                                       
Query: 240 cagttggtggcaaaatatttttgacaaagatgaatatagccttctcagcgctgagcttta 299
           |||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct: 265 cagtgggtggcaaaatattcttgacaaagatgaatatagccttctcagcactgagcttaa 206

                                                                     
Query: 300 ttctctttcgaaccacataaacgaactggccgactgtcagatcagcaggaaccagata 357
           ||||||| |||||||||||||| || ||||| || |||||||||||||||||||||||
Sbjct: 205 ttctcttccgaaccacataaacaaattggccaacagtcagatcagcaggaaccagata 148



 Score =  121 bits (61), Expect = 3e-27
 Identities = 88/97 (90%)
 Strand = Plus / Minus

                                                                       
Query: 45  agaatgattctccaaatgtattctcaccactgtaggtcatgtacaggaaaccatcctcat 104
           ||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||||||||
Sbjct: 361 agaatgattctccaaatgtgttctcgccactataggtcatataaaggaagccatcctcat 302

                                                
Query: 105 ctttgttttcctcgtaaatcgctgacatcatagcagc 141
           ||||||||||||| ||||| || ||||||||||||||
Sbjct: 301 ctttgttttcctcataaattgcagacatcatagcagc 265


>30064.m000482 gaba(A) receptor-associated protein, putative
          Length = 378

 Score =  125 bits (63), Expect = 2e-28
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                       
Query: 260 ttgacaaagatgaatatagccttctcagcgctgagctttattctctttcgaaccacataa 319
           ||||||||||||||||||||||||||||| || ||||||||||| || |||||||| |||
Sbjct: 245 ttgacaaagatgaatatagccttctcagcactcagctttattcttttccgaaccacgtaa 186

                                              
Query: 320 acgaactggccgactgtcagatcagcaggaaccag 354
           || ||||||||||| ||||||||||| ||||||||
Sbjct: 185 acaaactggccgacagtcagatcagctggaaccag 151



 Score =  121 bits (61), Expect = 3e-27
 Identities = 85/93 (91%)
 Strand = Plus / Minus

                                                                       
Query: 49  tgattctccaaatgtattctcaccactgtaggtcatgtacaggaaaccatcctcatcttt 108
           |||| |||||||||| ||||||||||| || |||||||||| ||| ||||||||||||||
Sbjct: 357 tgatgctccaaatgtgttctcaccactatatgtcatgtacaagaagccatcctcatcttt 298

                                            
Query: 109 gttttcctcgtaaatcgctgacatcatagcagc 141
           ||||||||| ||||||||||||||||| |||||
Sbjct: 297 gttttcctcataaatcgctgacatcatggcagc 265