Jatropha Genome Database

JcCA0154411.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154411.30 + phase: 0 /partial/short
         (146 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30064.m000481 gaba(A) receptor-associated protein, putative           234   1e-61
30064.m000482 gaba(A) receptor-associated protein, putative           170   1e-42
29842.m003584 gaba(A) receptor-associated protein, putative           115   7e-26

>30064.m000481 gaba(A) receptor-associated protein, putative
          Length = 363

 Score =  234 bits (118), Expect = 1e-61
 Identities = 139/146 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaatcagct 60
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1   atggctaagagctccttcaagttggaacatcctctggaaaggaggcaggcagaatcagct 60

                                                                       
Query: 61  cgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagc 120
           || ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct: 61  cgtattagggagaaatatccagatagaataccggttattgtggagagggctgaaagaagc 120

                                     
Query: 121 gacatacctgacattgacaaaaagaa 146
           ||||||||||||||||||||||||||
Sbjct: 121 gacatacctgacattgacaaaaagaa 146


>30064.m000482 gaba(A) receptor-associated protein, putative
          Length = 378

 Score =  170 bits (86), Expect = 1e-42
 Identities = 131/146 (89%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaatcagct 60
           ||||| || |||||||||||| ||||||| ||| | ||||||||||||||||||||||||
Sbjct: 1   atggccaaaagctccttcaagctggaacaccctctagaaaggaggcaggcagaatcagct 60

                                                                       
Query: 61  cgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagc 120
           || || |||||||| ||||| ||| |||| |||||||||||||| ||||| |||||||| 
Sbjct: 61  cgtataagggagaaatatcctgatcgaattccagttattgtggagagggccgaaagaagt 120

                                     
Query: 121 gacatacctgacattgacaaaaagaa 146
           ||||||||||||||||||||||||||
Sbjct: 121 gacatacctgacattgacaaaaagaa 146


>29842.m003584 gaba(A) receptor-associated protein, putative
          Length = 363

 Score =  115 bits (58), Expect = 7e-26
 Identities = 124/146 (84%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggcaaagagctccttcaagttggaacatcctttggaaaggaggcaggcagaatcagct 60
           ||||| || |||||||||||  | |||||||||||||| ||||||||||||||| | |||
Sbjct: 1   atggctaaaagctccttcaaacttgaacatcctttggagaggaggcaggcagaagctgct 60

                                                                       
Query: 61  cgaattagggagaagtatcccgatagaataccagttattgtggaaagggctgaaagaagc 120
           || || || ||||||||||| ||||||||||| || ||||| |||| |||||||||||| 
Sbjct: 61  cgcatcagagagaagtatcctgatagaatacctgtcattgtagaaaaggctgaaagaagt 120

                                     
Query: 121 gacatacctgacattgacaaaaagaa 146
           || || ||||| ||||| || |||||
Sbjct: 121 gatattcctgatattgataagaagaa 146