Jatropha Genome Database

JcCA0154091.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154091.30 + phase: 0 
         (591 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29729.m002363 Transcription factor RF2b, putative                      94   1e-18
29804.m001495 Transcription factor RF2b, putative                      74   1e-12

>29729.m002363 Transcription factor RF2b, putative
          Length = 1068

 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 113/135 (83%)
 Strand = Plus / Plus

                                                                       
Query: 376 aatgtgaggccaagacataggtatagcaattcggttgatgggtcttcgtttttggagtct 435
           |||| ||||||| | ||| | ||||| ||||| |||||||| |||||  |  ||||||||
Sbjct: 343 aatgcgaggccacgtcatcgttatagtaattctgttgatggctcttccatgctggagtct 402

                                                                       
Query: 436 atagaggccaagaaagctatggctcctgataaattagctgagctgtggactctcgatcca 495
           || ||||| || ||||||||||||||||||||| | |||||| ||||| |||| ||||| 
Sbjct: 403 attgaggctaaaaaagctatggctcctgataaacttgctgagttgtggtctcttgatcct 462

                          
Query: 496 aaacgagccaaaagg 510
           |||||||| ||||||
Sbjct: 463 aaacgagctaaaagg 477



 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 131/161 (81%)
 Strand = Plus / Plus

                                                                       
Query: 100 caccggcgggcacactccgaggtccatttccggcttcaggaagatctggatctcgtcaca 159
           ||||| || |||||||| || ||||||||| | || |  |||||||||||||| ||  | 
Sbjct: 100 caccgccgagcacactcagaagtccatttcagactaccagaagatctggatcttgtaccc 159

                                                                       
Query: 160 gatccattcgaaggaccatctggaagctccttcgatgagcttggatccgaggacgacctc 219
           || ||||| || || || || || ||||| || |||||||||||||| || || ||| ||
Sbjct: 160 gacccatttgagggtccgtccgggagctcatttgatgagcttggatctgaagatgacatc 219

                                                    
Query: 220 ttttgcacctacatggacattgaaaagctcggatccagacc 260
           |||||| | ||||||| |||||||||||| |||||||||||
Sbjct: 220 ttttgcgcttacatgggcattgaaaagcttggatccagacc 260


>29804.m001495 Transcription factor RF2b, putative
          Length = 1161

 Score = 73.8 bits (37), Expect = 1e-12
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 445 aagaaagctatggctcctgataaattagctgagctgtggactctcgatccaaaacgagcc 504
           |||||||||||| |||||||||| || |||||||| ||| |||| ||||| |||||||||
Sbjct: 511 aagaaagctatgcctcctgataagttggctgagctttggtctcttgatcctaaacgagcc 570

                
Query: 505 aaaag 509
           |||||
Sbjct: 571 aaaag 575