Jatropha Genome Database
- JcCA0154091.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0154091.20 - phase: 0
(618 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29729.m002364 RING-H2 finger protein ATL3C, putative 224 5e-58
28713.m000158 ring finger protein, putative 62 4e-09
29915.m000466 RING-H2 finger protein ATL5A, putative 52 4e-06
>29729.m002364 RING-H2 finger protein ATL3C, putative
Length = 627
Score = 224 bits (113), Expect = 5e-58
Identities = 324/397 (81%), Gaps = 6/397 (1%)
Strand = Plus / Plus
Query: 101 gaagctatactaatgaagcaaattttgacacaaatatggttattatattagcagctttgc 160
|||||||||| |||||||| |||||||||||||| ||||| || || |||||||||| |
Sbjct: 92 gaagctatacgaatgaagccaattttgacacaaacatggtgataattctagcagctttac 151
Query: 161 tctgtgcattaatatgtgcacttgggttaaactcaatagttcgctgtgcattaaggtgta 220
||||||||||||||||||||||||| ||||||||||||| || || || ||||| ||||
Sbjct: 152 tctgtgcattaatatgtgcacttggcctaaactcaatagtacgttgcgctttaagatgta 211
Query: 221 gcagaaggtttagcttcgagacagctgatgaggcagcagctcgtttagcagcaactgggc 280
||||||||||| || ||||| ||||||| |||||||||||| | || ||||| || |
Sbjct: 212 gcagaaggtttgcttttgagactcctgatgaagcagcagctcgtctggctgcaacaggac 271
Query: 281 ttnnnnnnngcgcattgagacaaattcctgtagttatatatggttcagcaggagatggaa 340
|| | ||| || |||| || || || || |||||||| ||||| ||||
Sbjct: 272 ttaaaaagagtgcactgcgacagatccccgtggtcatatatggagcagca------ggaa 325
Query: 341 tacaaataatagctacagattgtgcaatttgtcttggagagtttatggatggggagaaaa 400
||||||||||||| ||||||||||||||||| ||||||||||| ||||| || |||
Sbjct: 326 tacaaataatagcaacagattgtgcaatttgccttggagagttctcagatggtgaaaaag 385
Query: 401 ttagagttttgccaaaatgtagccatggttttcatgtaaggtgtatagacacttggttgg 460
| |||||| |||| ||||||| |||||||||||||||||||||||||| || ||||| |
Sbjct: 386 tgagagttctgccgaaatgtaatcatggttttcatgtaaggtgtatagatacatggttag 445
Query: 461 tttcacattcttcttgtcctacttgtagacagtcatt 497
||||| ||||||||||| ||||| ||||||||||
Sbjct: 446 gatcacactcttcttgtccaacttgccgacagtcatt 482
>28713.m000158 ring finger protein, putative
Length = 618
Score = 61.9 bits (31), Expect = 4e-09
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 148 ttagcagctttgctctgtgcattaatatgtgcacttgggttaaactcaatagttcgctgt 207
|||||||| || |||||||||||||||||||| ||||| ||||||| || || || |||
Sbjct: 154 ttagcagccttactctgtgcattaatatgtgctcttggcctaaactccatcgtacgttgt 213
Query: 208 gcattaaggtgtagc 222
|| ||||||| ||||
Sbjct: 214 gctttaaggtttagc 228
>29915.m000466 RING-H2 finger protein ATL5A, putative
Length = 561
Score = 52.0 bits (26), Expect = 4e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 415 aaatgtagccatggttttcatgtaaggtgtatagacacttgg 456
||||||| |||||||||||||| ||||| ||||||||||||
Sbjct: 376 aaatgtaatcatggttttcatgtcaggtgcatagacacttgg 417