Jatropha Genome Database

JcCA0154071.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154071.30 - phase: 0 
         (819 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002020 conserved hypothetical protein                          180   9e-45
30147.m013970 conserved hypothetical protein                           54   1e-06

>29647.m002020 conserved hypothetical protein
          Length = 861

 Score =  180 bits (91), Expect = 9e-45
 Identities = 223/267 (83%)
 Strand = Plus / Plus

                                                                       
Query: 397 gttggatggatctgtgctgttttctctgttagtgtttttgctgctcctctcagtatcatg 456
           ||||| ||||| || || || ||||||||  |||| || ||||||||||| |||||||||
Sbjct: 400 gttgggtggatttgcgccgtcttctctgtctgtgtcttcgctgctcctcttagtatcatg 459

                                                                       
Query: 457 aggcttgttataagaacaaagagtgtagagtacatgcccttctcattatcattctttttg 516
           ||||||||||| | |||||||||||| ||||||||||| |||||| | |||||||| |||
Sbjct: 460 aggcttgttattaaaacaaagagtgtggagtacatgccattctcactgtcattcttcttg 519

                                                                       
Query: 517 accctctgtgctacttcctggttgggatatggccttgctgtggaagattattatattgct 576
           || ||||||||||  ||||||||||||||||||||||||||| | ||||| | ||| || 
Sbjct: 520 actctctgtgctatatcctggttgggatatggccttgctgtgaatgattactttatcgca 579

                                                                       
Query: 577 acgccaaatgttttcgggttcgggtttggaatagctcagatgatattgtacttgatttac 636
            | |||||  |  | || |||  |||||| |||| ||||||| || ||||| |||| |||
Sbjct: 580 tcaccaaacatcctaggattcttgtttggtatagttcagatggtactgtacatgatctac 639

                                      
Query: 637 aagaagaaaaagaatgagattttgcct 663
           ||||| |||||||||||||| ||||||
Sbjct: 640 aagaacaaaaagaatgagatcttgcct 666



 Score =  107 bits (54), Expect = 1e-22
 Identities = 156/190 (82%)
 Strand = Plus / Plus

                                                                       
Query: 58  tccttctttgtatatttggctccattgccaacattttacagaattttcaagaaaaaatca 117
           |||||| | ||||||||||||||||||||||| ||||  || ||| ||||||||||||||
Sbjct: 58  tccttcctcgtatatttggctccattgccaaccttttggaggattgtcaagaaaaaatca 117

                                                                       
Query: 118 actgaaggcttccaatccataccctattcagtagctctatttagtgcaatgttgacgctt 177
           || ||||| ||||| ||||| || ||||| ||||| || |||||||| ||||| || || 
Sbjct: 118 acagaaggattccagtccattccgtattcggtagcactgtttagtgccatgttaactctc 177

                                                                       
Query: 178 tactatggcactctcaaagcagatggctttatgcttattacgatcaactctgttggctgc 237
           || |||| ||||||||| | | |||   || |||| ||||| || |||||  ||||||||
Sbjct: 178 tattatgccactctcaaggaaaatgcaattctgctcattaccataaactccattggctgc 237

                     
Query: 238 gtcattgaag 247
            |||||||||
Sbjct: 238 ctcattgaag 247


>30147.m013970 conserved hypothetical protein
          Length = 648

 Score = 54.0 bits (27), Expect = 1e-06
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 452 tcatgaggcttgttataagaacaaagagtgtagagtacatgcc 494
           |||||||| | ||||||||||||||||||||  ||||||||||
Sbjct: 386 tcatgaggatggttataagaacaaagagtgttaagtacatgcc 428