Jatropha Genome Database

JcCA0154071.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154071.20 - phase: 0 
         (570 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29647.m002021 conserved hypothetical protein                          111   5e-24

>29647.m002021 conserved hypothetical protein
          Length = 582

 Score =  111 bits (56), Expect = 5e-24
 Identities = 134/160 (83%)
 Strand = Plus / Plus

                                                                       
Query: 72  gaagaagaagaagaacatgatgagattaggagggcctgctctttcccttgaagcattcgc 131
           |||||| ||||||||||||||| |||||||||| |  | ||||||||| ||||  || ||
Sbjct: 78  gaagaaaaagaagaacatgatgcgattaggaggacagggtctttccctcgaagtctttgc 137

                                                                       
Query: 132 taatgccaaatccaccagaaacaagtacaatcccgctctaataaaaaagcaaagagagtt 191
           |||||| |||||||  || |   | |||||||| ||| | ||||| ||||||||||||||
Sbjct: 138 taatgcgaaatccagtagcagtcactacaatccagctgttataaagaagcaaagagagtt 197

                                                   
Query: 192 ctataagaatgcaaagtacgtgagcaagtttaagaaaaag 231
            || |||||||||||||| |||||||| ||||||||||||
Sbjct: 198 ttacaagaatgcaaagtatgtgagcaaatttaagaaaaag 237



 Score = 89.7 bits (45), Expect = 2e-17
 Identities = 90/105 (85%)
 Strand = Plus / Plus

                                                                       
Query: 322 aaaaagaataataacaagaaaaaaggttcatacagtttgaaaaaattatatgagaagcag 381
           ||||||||||| || ||||| || || ||  | ||||||| | ||||||| ||||| |||
Sbjct: 334 aaaaagaataagaagaagaagaatgggtctcatagtttgagagaattatacgagaaacag 393

                                                        
Query: 382 cacgaagagaaagagaaggcaagaactgagagggaggcatttatt 426
           ||| ||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 394 caccaagagaaagagaaagcaagaactgagagggaggcaattatt 438



 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 56/61 (91%)
 Strand = Plus / Plus

                                                                       
Query: 488 tgttcaagaagacccggcatggtcaaccagtcatgaagtatagaattgagcatctcttgc 547
           |||||||||||||||| |||||||| || || |||||||||||||||||||||||| |||
Sbjct: 500 tgttcaagaagacccgacatggtcagcctgttatgaagtatagaattgagcatctcctgc 559

            
Query: 548 a 548
           |
Sbjct: 560 a 560