Jatropha Genome Database

JcCA0153811.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0153811.20 + phase: 0 /partial
         (735 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29905.m000424 conserved hypothetical protein                          365   e-100

>29905.m000424 conserved hypothetical protein
          Length = 1761

 Score =  365 bits (184), Expect = e-100
 Identities = 367/428 (85%)
 Strand = Plus / Plus

                                                                       
Query: 305 caaatcaacctaagatccaggatgagttaataatagcaagagaaattgttataaatgatg 364
           |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |
Sbjct: 185 caaatcaacctaagatccaggatgagttaacaattgcacgagaaattgttataaatgacg 244

                                                                       
Query: 365 ctgagtcttctgttcgttacaaactcacaaagcgtcaaacacaagaggagattcagaagt 424
           | ||||| ||  |||||||||| ||||| |||||||| || || || ||||| |||||||
Sbjct: 245 cagagtcctccattcgttacaagctcactaagcgtcagacgcatgaagagatccagaagt 304

                                                                       
Query: 425 gcactggcgctgtggtgataactaggggcaaataccgtccactgaatacaccgcctgatg 484
           ||||||| ||||| |||||||||||||| ||||||||||  |  ||| | || |||||||
Sbjct: 305 gcactggtgctgtcgtgataactaggggaaaataccgtctgccaaatgccccacctgatg 364

                                                                       
Query: 485 gtgaaaagccattgtatcttcacatatcttctggggctcatttgaaagatactgcagaaa 544
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 365 gtgaaaaaccattgtatcttcacatatcttctggggctcatttgaaagataccgcggaaa 424

                                                                       
Query: 545 ggattttagcagttgatcgtgcggctgccatgattgaagaaatgctgaaacagagtccta 604
           |||||||||||||||||||||| ||||||||| |||||||||| ||||||||| |||| |
Sbjct: 425 ggattttagcagttgatcgtgcagctgccatggttgaagaaattctgaaacagggtccaa 484

                                                                       
Query: 605 acttgcaatctgctccgtccatttttcccattgctgggggcagtgggttaaaggcactta 664
           | || ||  |||||  |||  || ||||  | ||  | || |||||  | |||||||| |
Sbjct: 485 atttacagcctgctttgtctgttgttcctgtggccagtggtagtggagtgaaggcactga 544

                                                                       
Query: 665 gcacgtgtgtgtttttgggctttgacgcagactcatcactgaacattgctgcccgaattc 724
           |||| ||||||| |||||||||||| ||||||  |||| ||||||||||||| |||||||
Sbjct: 545 gcacatgtgtgtatttgggctttgatgcagacgaatcattgaacattgctgctcgaattc 604

                   
Query: 725 gcggacca 732
           | ||||||
Sbjct: 605 gtggacca 612



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 161 ctcttgctggaatctctcttcctgggcttgcttcagtctctggtgcctatttaactaat 219
           ||||||||||||||||||| |||||  ||||||| |||||||||||   ||||||||||
Sbjct: 44  ctcttgctggaatctctctgcctggaattgcttctgtctctggtgctcttttaactaat 102