Jatropha Genome Database
- JcCA0153071.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0153071.20 + phase: 0
(1980 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30138.m004047 pentatricopeptide repeat-containing protein, putative 585 e-166
>30138.m004047 pentatricopeptide repeat-containing protein, putative
Length = 1554
Score = 585 bits (295), Expect = e-166
Identities = 936/1152 (81%)
Strand = Plus / Plus
Query: 109 attctcgactccgaaacccctgaacaagccctccaatttttcactaacgttttaaaccaa 168
|||||| | ||| ||||||||||||||||||| | ||||||| ||||||||| |||
Sbjct: 100 attctccattccaaaacccctgaacaagcccttgatactttcacttccgttttaaaacaa 159
Query: 169 aacccaaaaaatccaaccaagaatctacacttatattctgctgtaatccatgtgttaaca 228
|||||||| || || || ||||| || ||||| |||||||| || ||||| ||||||
Sbjct: 160 aacccaaacaaccctactaagaagcttcacttgtattctgcagtcatccactacttaaca 219
Query: 229 agtgcgagaatatacacgaccgccaggtgcttgacaaaagacctcatccagaccctcctc 288
|||| | | | ||| | || |||||||| |||||||||||||| ||||| ||| | |||
Sbjct: 220 ggtgctaaagtgtaccccacggccaggtgtttgacaaaagacctaatccaaaccttgctc 279
Query: 289 caatcccgcaaaccttaccggattagttctttggttttcaatgcccttaatcagctacag 348
|||||| ||| |||| ||| ||| |||||||||||||||||| |||| ||||||||
Sbjct: 280 caatcctgcacacctcgccgtgttaattctttggttttcaatgctcttagtcagctacga 339
Query: 349 ggcccaaaatttagccccaatgtgtttggagtgttgatcattgcattttctgagttgggt 408
|| | ||||||| || | |||||||||||| ||||| ||||||||||||||| |||||
Sbjct: 340 ggatctaaatttaatcctagtgtgtttggagtattgattattgcattttctgaggtgggt 399
Query: 409 cttcttgatgaagccttgtcggtgtatcgcaagaccggaattttccctgcagtgcaagct 468
||| |||||||||||||| ||||||| ||| || |||||||||||||||||||
Sbjct: 400 cttgttgatgaagccttgcgagtgtatcttaaggttggggctttccctgcagtgcaagct 459
Query: 469 tgtaatgcactcctaaatgggttggtcaagaagggtagcttcgattccttgtgggagtta 528
|||||||| ||| ||||||| || | || ||| |||| || ||| | ||||||| ||
Sbjct: 460 tgtaatgctctcttaaatggactgttaaaaaagagtagttttgatatcatgtgggaattg 519
Query: 529 tacaaagacatggtttcacgcggattggtgcctagtgttgtcacttataatgtgttagtg 588
|| || ||||||||||||| | ||| | || | |||||| |||||||||||||||||
Sbjct: 520 tataataacatggtttcacgtaggttgtttcccactgttgttacttataatgtgttagtt 579
Query: 589 gatgcttgttgtagccaaggtgacatttggaaagccaagagcttgattaatgagatggag 648
|||||||| ||| |||||||||| ||| || ||| ||||| ||||| | ||| |||| |
Sbjct: 580 gatgcttgctgtcgccaaggtgatgttttgagagctaagagtttgatcagtgaaatggtg 639
Query: 649 aagaaaggaattgaaccaacggttgtaatctactcgactctcatgcgtggtctctgcagc 708
|||||||| ||||||||||||||||| ||||| ||||||| || | |||||||||||||
Sbjct: 640 aagaaagggattgaaccaacggttgtgatctatacgactcttattcatggtctctgcagc 699
Query: 709 gagagtaaattgacagaagcacaagatatgttgagacaaatgaaggaatccggggtttta 768
||||||||||||| |||||| || ||||| |||||||||||||| || || |||||
Sbjct: 700 gagagtaaattgatggaagcagaaagcatgttcagacaaatgaaggattctggagttttt 759
Query: 769 cccaatttgtatacttataatgttctgatggatgggtactgcaaaatagcaaaaataaaa 828
||||||||||| ||||| ||||||||||||||||| |||||||||| |||||| | |||
Sbjct: 760 cccaatttgtacacttacaatgttctgatggatggttactgcaaaacagcaaatgtgaaa 819
Query: 829 caagtcctggacttgtttcaggatctgcttaatgacggactgcagccaaatgttgtgaca 888
|||| ||| |||||| ||||| ||||| |||| |||||||||||||||||||| |||
Sbjct: 820 caagcccttcacttgtatcagggcatgcttgatgatggactgcagccaaatgttgtcaca 879
Query: 889 tttggtatcttagtagatgcactttgcaaggtgggtgaattattggcatcgaggaacttg 948
|||||||| | | ||||| || ||||| || |||||||||| ||| | |||| ||
Sbjct: 880 tttggtatactgattgatgcgctctgcaaagttcgtgaattattagcagcaaggagattt 939
Query: 949 tttgttcaaatggccaagttgggtgttgtgccaaatgtccttgtgtataatagtcttatt 1008
|||||||| ||||| ||||| ||||| || |||||||| |||||| ||||||||| |||
Sbjct: 940 tttgttcagatggctaagttcggtgtggtaccaaatgtagttgtgtttaatagtctgatt 999
Query: 1009 aatgggtactctaaggcggggaatctcccaaaggcaatggatttgcttttggaaatggaa 1068
|||| ||||| ||||| |||||| | | | || | |||||||||||| || ||||||
Sbjct: 1000 gatggatactccaaggcagggaattgctccgaagccacggatttgcttttagagatggaa 1059
Query: 1069 aagttcaaaattgttcctgatgttttcacttacagtatacttatcaagagtgtttgtagt 1128
|||||||||||| |||||||||||||||||| ||||| |||||||||| || |||||
Sbjct: 1060 aagttcaaaatttctcctgatgttttcacttatagtattcttatcaagaatgcatgtaga 1119
Query: 1129 ttaagtacagttaaagaagcagatagaatactgnnnnnnntggagaaagaaggagttcca 1188
|| | |||||| |||| |||||| |||||| ||||||||||||| |||||
Sbjct: 1120 ctaggaacagttgaagaggcagatgatatactgaaacgaatggagaaagaaggggttcct 1179
Query: 1189 gcaaattctgtgatatacaattcaatgattgatggatactgcaagaaaggaaacatggag 1248
|||||||||||| |||||||||| | |||||||||||||||||| |||| || ||||||
Sbjct: 1180 gcaaattctgtggtatacaattcgctaattgatggatactgcaaggaagggaatatggag 1239
Query: 1249 aaggctttggag 1260
|| |||||||||
Sbjct: 1240 aaagctttggag 1251
Score = 161 bits (81), Expect = 2e-38
Identities = 210/253 (83%)
Strand = Plus / Plus
Query: 1703 agatgtttaaagccagcaagttgttctttgatatgagatgcaatgatttaagaccagatg 1762
|||| |||||||| | ||||| |||| ||||||||| |||||| |||||||| ||||
Sbjct: 1250 agatttttaaagctactaagttcttctcagatatgagacgcaatggcttaagacctgatg 1309
Query: 1763 cattagcttatactgttattttgcaggggcatcttaatgtcaaacatgtgattgacgtga 1822
|||| |||||| |||| || || ||||||||||| |||| ||||||| || || || |
Sbjct: 1310 cattggcttatgctgtcatgttacaggggcatctaaatgccaaacatatggccgatgtaa 1369
Query: 1823 tgatattgcatgctgatatgataaagatgggtattgtgccaaatgaagtcatttaccgga 1882
|||| |||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 1370 tgatgttgcatgctgatatgataaagatgggtattgtgccaaatgaagtcacatctcagg 1429
Query: 1883 tcttaatgaggggttatcgagagagtggatacctgaaatcagcactcaggtgttctgaag 1942
|| ||| ||||||||||| ||| | |||||||||||| ||||| ||| |||||||| ||
Sbjct: 1430 tcgtaaggaggggttatcaagacaatggatacctgaagtcagctctctggtgttctagag 1489
Query: 1943 acatgatagaatc 1955
|| ||| ||||||
Sbjct: 1490 acttgacagaatc 1502