Jatropha Genome Database
- JcCA0152991.30
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0152991.30 + phase: 0 /partial
(962 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29848.m004629 grr1, plant, putative 735 0.0
30111.m000706 grr1, plant, putative 76 4e-13
28320.m001145 grr1, plant, putative 74 2e-12
>29848.m004629 grr1, plant, putative
Length = 1956
Score = 735 bits (371), Expect = 0.0
Identities = 821/974 (84%), Gaps = 24/974 (2%)
Strand = Plus / Plus
Query: 1 atgtctaagctctttggattcgctggagatgatgatttttgcccggggggcccaatatac 60
||||||||||||| |||||| ||||||||||| ||||||||||| ||||| ||||||||
Sbjct: 1 atgtctaagctctgtggatttgctggagatgacgatttttgccctggggggtcaatatac 60
Query: 61 gcaaacccgaaggaggcaagcctacttttgtcccttggtcgccatgtggatgtgtatttt 120
||||||| |||||| |||| ||||||||||||||| ||||||||||||||||||
Sbjct: 61 acaaaccccaaggagctcggcctctttttgtcccttggtcatcatgtggatgtgtatttt 120
Query: 121 ccttctcgcaagaggtctcgcatcagtgctccatttgttcttgttggagagaggtttgag 180
||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct: 121 ccttcccgcaagaggtctcgcatcaatgctccatttgttttcagtggagagaggtttgag 180
Query: 181 cagaaaaagcaggcatctattgaagttctgccagatgagtgtctctttgaaatcttcagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagaaaaagcaggcatctattgaagttctgccagatgagtgtctctttgaaatcttcaga 240
Query: 241 cgtttgcctggaggggaggaacgaagtgcctgtgcttgtgtttcaaagcgctggcttgct 300
|||||||| ||| |||||| | |||||||| ||| ||||||||||||||||||||| |
Sbjct: 241 cgtttgcc---aggagaggaaaggagtgcctgcgctggtgtttcaaagcgctggcttggt 297
Query: 301 cttttgagcaatatgtccagggatgaactttgcagcaagaaaactacccagttgttgaat 360
||| |||||||| ||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 298 cttctgagcaatttgtccagggatgagctttgcagcaagaaaactacccaattgttggat 357
Query: 361 gaatcagctgaaaagaatg------------gtgaggctgaagatctggaaattgaggat 408
||||||||| ||||||||| |||||||||||||| || ||||||| |
Sbjct: 358 gaatcagctaaaaagaatgttgaggtgaaatctgaggctgaagatcaagagattgagggt 417
Query: 409 gatggatatctgtccaggagcttggaggggaagaaggccacagatattggacttgcagct 468
||||| || || ||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct: 418 gatggttacctctccaggagcttggagggaaagaaggccactgatattagacttgcagca 477
Query: 469 attgcggtgggaacttctagtcggggaggtttgggcaaactttctatccgtgg------- 521
||||| || || || ||| | | || ||||| || || || ||||| |||||
Sbjct: 478 attgctgttgggacagctactagagggggtttagggaagctctctattcgtggaagcaat 537
Query: 522 --gagccgtggggtaacaagtgtaggcctgagagcaattgcccgtggttgcccttctttg 579
||| |||| || ||| |||||||||||| || ||||||||||| || ||||| |
Sbjct: 538 tctagctgtggagtgacagctgtaggcctgagggcgattgcccgtggctgtccttccctt 597
Query: 580 agggctctttccttgtggaatttgccttctgttggcaatgaaggtctattcgagattgct 639
||||||||||||||||||||||| |||| ||| || |||||||||| || |||||||||
Sbjct: 598 agggctctttccttgtggaatttaccttttgtcagcgatgaaggtctgtttgagattgct 657
Query: 640 aatggctgccacatgctagagaagctcgatctttgtgggtgtcctgcaatttctgacaag 699
|||||||| |||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 658 aatggctgtcacatgctggagaagcttgatctttgtggatgtcctgcaatttctgacaag 717
Query: 700 ggtctgcttgcaattgcgaagagttgtcctaatttgactgagttaaccatagaatcttgt 759
||| |||||||||| || |||| || |||||||||||||| | || |||||||| |||
Sbjct: 718 ggtttgcttgcaatcgcaaagaactgccctaatttgactgatctgactatagaatcatgt 777
Query: 760 gcaaatattgggaatgatggtctgcaagccattggccaatgttgcaacaatctgaaatcc 819
||||| ||||||||||| || | ||||| ||||||||| ||| | ||||| ||||||
Sbjct: 778 gcaaaaattgggaatgaaggcttacaagctgttggccaatattgtacaaatctaaaatcc 837
Query: 820 atctcaatcaaggactgcccagttgttggggatcaaggaattgcaagtctggtatcttca 879
||||| |||||||||||| ||| ||||||||||||||||||| | | || || ||||||
Sbjct: 838 atctccatcaaggactgctcagctgttggggatcaaggaatttctggccttgtgtcttca 897
Query: 880 gccacatgtgtgctggcaaagttgaagctccagtctttgaacattactgatgtatcttta 939
|||||| | ||| ||||| ||||||||||| || |||||||||||||||| ||| ||
Sbjct: 898 accacatattatctgacaaaggtgaagctccaggctctgaacattactgatgtttctcta 957
Query: 940 gctgttattggaca 953
||||||||||||||
Sbjct: 958 gctgttattggaca 971
>30111.m000706 grr1, plant, putative
Length = 384
Score = 75.8 bits (38), Expect = 4e-13
Identities = 50/54 (92%)
Strand = Plus / Plus
Query: 106 gtggatgtgtattttccttctcgcaagaggtctcgcatcagtgctccatttgtt 159
||||||||||||| |||||| ||||||||||||||||| | |||||||||||||
Sbjct: 46 gtggatgtgtattctccttcccgcaagaggtctcgcattaatgctccatttgtt 99
Score = 65.9 bits (33), Expect = 4e-10
Identities = 135/169 (79%)
Strand = Plus / Plus
Query: 542 taggcctgagagcaattgcccgtggttgcccttctttgagggctctttccttgtggaatt 601
||||||| || ||||||||| || | || ||||| | ||||||| |||| |||| ||||
Sbjct: 182 taggcctaagggcaattgcctgtagctgtccttcccttagggctccttccatgtgtaatt 241
Query: 602 tgccttctgttggcaatgaaggtctattcgagattgctaatggctgccacatgctagaga 661
| |||||||| ||||||||| |||| ||||||||||| | || |||||| ||||
Sbjct: 242 taccttctgtcaataatgaaggtatatttgagattgctaaagcttgttgcatgctggaga 301
Query: 662 agctcgatctttgtgggtgtcctgcaatttctgacaagggtctgcttgc 710
|||| ||| ||| ||| |||||||| |||||| |||| ||| |||||||
Sbjct: 302 agcttgatatttatggatgtcctgcgatttctaacaatggtttgcttgc 350
>28320.m001145 grr1, plant, putative
Length = 1947
Score = 73.8 bits (37), Expect = 2e-12
Identities = 112/137 (81%)
Strand = Plus / Plus
Query: 174 gtttgagcagaaaaagcaggcatctattgaagttctgccagatgagtgtctctttgaaat 233
|||||||||||| |||||| |||| ||||| ||||| |||||||| || |||||||| ||
Sbjct: 174 gtttgagcagaataagcagccatcaattgatgttcttccagatgaatgcctctttgagat 233
Query: 234 cttcaggcgtttgcctggaggggaggaacgaagtgcctgtgcttgtgtttcaaagcgctg 293
||| ||||| | ||||| || | ||| | ||||| || |||||||| || ||||||||
Sbjct: 234 ctttaggcgcatccctggtggcaaagaaaggagtgcttgcgcttgtgtctccaagcgctg 293
Query: 294 gcttgctcttttgagca 310
|||| | || |||||||
Sbjct: 294 gcttacactattgagca 310