Jatropha Genome Database

JcCA0152991.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152991.20 + phase: 2 /partial
         (463 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29848.m004630 conserved hypothetical protein                          466   e-131
28320.m001144 conserved hypothetical protein                           56   2e-07

>29848.m004630 conserved hypothetical protein
          Length = 522

 Score =  466 bits (235), Expect = e-131
 Identities = 406/463 (87%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttgttttggatgctgtgctaaaccttctacaattaacgcggttgatcaatcatcaaa 60
           |||||||||||||||||||   ||||||||||||| || | | || ||| | ||||||||
Sbjct: 57  aggttgttttggatgctgtataaaaccttctacaagtatcacagtcgataactcatcaaa 116

                                                                       
Query: 61  gggactgagaattaaagacgaaagagcaaagcaacacagcatacccgacgatttttggag 120
           |||| | |||| | ||||  ||| |||||||||||   ||||| | ||||| ||||||||
Sbjct: 117 gggattaagaaatcaagagcaaacagcaaagcaacttggcatatcagacgacttttggag 176

                                                                       
Query: 121 ttccagtgcaggtgacatggactatagtggagtacaatcccaaagaagtgcttcatcaat 180
             ||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 177 caccagtgcaggtgaaatggactatagtggagtacaatcccaacgaagtgtttcatcaat 236

                                                                       
Query: 181 cagcgccttgaatcagccctttgatccctctgctaatgctggcagcacaagcaatccttc 240
           |||| |  ||||||| || |||||||| |   ||||||||||||||||||||||||||||
Sbjct: 237 cagcacactgaatcaaccttttgatccttacactaatgctggcagcacaagcaatccttc 296

                                                                       
Query: 241 tgaatttgtaaactatggtcttcttctctggaagcaaacaaggcagcagtggcttgcaaa 300
            |||||||||||  ||||||||||||| ||||||||||| |||||||| |||||||||||
Sbjct: 297 ggaatttgtaaatcatggtcttcttctttggaagcaaaccaggcagcaatggcttgcaaa 356

                                                                       
Query: 301 taaaaggtctccaaacaagaaacaagttcgagaacccactataaggtggaatgccactta 360
           ||||| |||||||||||||| |||||| |||||||| ||| |||| |||||||| |||||
Sbjct: 357 taaaaagtctccaaacaagacacaagtacgagaacctactctaagttggaatgctactta 416

                                                                       
Query: 361 tgagaacttactagggtcaaacaagcctttccccagacctatccctcttgctgaaatggt 420
           ||| || ||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 417 tgaaaatttactagggacaaacaagccttttcccagacgtattcctcttgctgaaatggt 476

                                                      
Query: 421 ggattttctggttgatgtttgggaacaggagggtttgtatgac 463
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 477 ggattttcttgttgatgtttgggaacaggagggtttgtatgac 519


>28320.m001144 conserved hypothetical protein
          Length = 522

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 46/52 (88%)
 Strand = Plus / Plus

                                                               
Query: 411 ctgaaatggtggattttctggttgatgtttgggaacaggagggtttgtatga 462
           |||||||||| ||||||||||||||  | ||||| |||||||| ||||||||
Sbjct: 467 ctgaaatggttgattttctggttgacatatgggagcaggagggattgtatga 518



 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 2  ggttgttttggatgctgtgctaaacc 27
          ||||||||||||||||||||||||||
Sbjct: 61 ggttgttttggatgctgtgctaaacc 86