Jatropha Genome Database

JcCA0152731.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152731.20 + phase: 0 
         (618 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29742.m001385 conserved hypothetical protein                          285   2e-76

>29742.m001385 conserved hypothetical protein
          Length = 702

 Score =  285 bits (144), Expect = 2e-76
 Identities = 309/364 (84%)
 Strand = Plus / Plus

                                                                       
Query: 251 agatatgttggtatttcactgactcttgggagcaattccgaattaatggaagggttgatg 310
           |||||||||||||||| || ||||||||||||||||| || || ||||||||||||||||
Sbjct: 335 agatatgttggtattttacggactcttgggagcaatttcgtatcaatggaagggttgatg 394

                                                                       
Query: 311 ttattgatggatcgaatcttgattctgtgaagcttcagctacgagagaaatcttggtatg 370
           |||||||||| ||  ||| |||| | ||||||||| ||||| ||||||||||||||| ||
Sbjct: 395 ttattgatggttcagatcctgatccagtgaagcttgagctaagagagaaatcttggtttg 454

                                                                       
Query: 371 atagttctataaagtcaaggatgcagtaccttggtcctaatccagggcttccttgtctaa 430
            |||||||||||| |||||  | |||||||| ||||||||||| || |||||||||||||
Sbjct: 455 ctagttctataaaatcaagacttcagtacctcggtcctaatcctggtcttccttgtctaa 514

                                                                       
Query: 431 atgagcgaccttccaatgaattctttctggatccttcttcaggcccagttgctccatttt 490
             |||| || | ||| |||| |||||||||||||||||||||||||||| ||  | ||||
Sbjct: 515 ccgagcaacatcccagtgaactctttctggatccttcttcaggcccagtcgccgcctttt 574

                                                                       
Query: 491 gcctgcttattgtagatccagagcaggttgattacttgaatttgaaaagtaaccagagga 550
           |||||||  |  |||||||||||||||||||||||||||| ||||| |||| |||||| |
Sbjct: 575 gcctgctagtcctagatccagagcaggttgattacttgaacttgaagagtagccagagaa 634

                                                                       
Query: 551 taatgtttaccttcacgcaaaatgccaatggagaaaattgctggaattcagtgaggatca 610
            ||| |||||| |    ||||  | ||||||||||||| | |||||||||| ||| ||||
Sbjct: 635 caatatttaccattggccaaagggtcaatggagaaaatagttggaattcagagagtatca 694

               
Query: 611 atcc 614
           ||||
Sbjct: 695 atcc 698



 Score = 91.7 bits (46), Expect = 5e-18
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 23  cagtaagcgcaacaactccatggaagcagcttctgataagggcattagagtccaattcgc 82
           |||||| ||||||  |||||||||||||||||||| |||| || |||||||| ||||| |
Sbjct: 62  cagtaaccgcaacggctccatggaagcagcttctgttaagcgcgttagagtcgaattcac 121

                                         
Query: 83  acctgaagcactcatccttcttccaattgg 112
           |||||| |||||| |||||||| |||||||
Sbjct: 122 acctgaggcactcttccttctttcaattgg 151