Jatropha Genome Database
- JcCA0152621.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0152621.10 - phase: 0 /partial
(474 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29758.m000642 Two-component response regulator ARR2, putative 448 e-125
29805.m001503 sensory transduction histidine kinase, putative 210 6e-54
30130.m000280 sensory transduction histidine kinase, putative 176 8e-44
>29758.m000642 Two-component response regulator ARR2, putative
Length = 1980
Score = 448 bits (226), Expect = e-125
Identities = 298/322 (92%)
Strand = Plus / Plus
Query: 1 atggcagttacagcagtagaaaatggtcttcaagcttggaagcttctagaagacctaacc 60
|||||||||||||| || | ||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1 atggcagttacagctgttgcaaatggtcttcaagcttggaaacttctagaagatctaacc 60
Query: 61 aatcattttgatctggttttaactgaggttgtcatgccttgtgtatcaggcattggcctt 120
|||||| ||||||| ||||| ||||||| | |||||||||| |||| || |||||||||
Sbjct: 61 aatcatattgatctaattttatctgaggtagccatgccttgtttatcgggaattggcctt 120
Query: 121 ttatgtaagattatgaaccacaaaacctgcaagaatattcctgtgattatgatgtcatct 180
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatgcaagattatgaaccacagaacctgcaagaatattcctgtgattatgatgtcatct 180
Query: 181 catgattccatgaacatagtctttaaatgtttatcaaagggtgcacttgactttttagtg 240
|||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 181 catgattccatgaatgtagtctttaagtgtttgtcaaagggtgcacttgactttttagtg 240
Query: 241 aagcctattcgaaagaatgagcttaaaaacctctggcaacatgtttggaggaaatgccac 300
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 241 aagcctattcgaaagaatgagcttaaaaacctttggcagcatgtttggaggaaatgccac 300
Query: 301 agctctagtggaagtggaagtg 322
||||||||||| ||||| ||||
Sbjct: 301 agctctagtggtagtgggagtg 322
>29805.m001503 sensory transduction histidine kinase, putative
Length = 2289
Score = 210 bits (106), Expect = 6e-54
Identities = 226/266 (84%)
Strand = Plus / Plus
Query: 46 ctagaagacctaaccaatcattttgatctggttttaactgaggttgtcatgccttgtgta 105
|||||||| |||||||||| |||| || |||||||||||||| ||||||||||| ||
Sbjct: 379 ctagaagatttaaccaatcagattgacctcgttttaactgaggtagtcatgccttgctta 438
Query: 106 tcaggcattggccttttatgtaagattatgaaccacaaaacctgcaagaatattcctgtg 165
|| |||||||| ||||| | |||||||||| ||||||||| |||| ||| |||| ||
Sbjct: 439 tctggcattggtcttttgtacaagattatgagccacaaaacgcgcaaaaatgttcccgta 498
Query: 166 attatgatgtcatctcatgattccatgaacatagtctttaaatgtttatcaaagggtgca 225
|||||||||||||||||||| |||||| | |||||||||| ||||| ||||| |||||
Sbjct: 499 attatgatgtcatctcatgactccatgggcttagtctttaagtgtttgtcaaaaggtgct 558
Query: 226 cttgactttttagtgaagcctattcgaaagaatgagcttaaaaacctctggcaacatgtt 285
|||| ||||||||||||||||| ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 559 gttgattttttagtgaagcctatacgaaagaatgaacttaagaacctttggcagcatgtt 618
Query: 286 tggaggaaatgccacagctctagtgg 311
||||| | |||||| || ||||||||
Sbjct: 619 tggagaagatgccatagttctagtgg 644
>30130.m000280 sensory transduction histidine kinase, putative
Length = 2424
Score = 176 bits (89), Expect = 8e-44
Identities = 248/301 (82%)
Strand = Plus / Plus
Query: 22 aatggtcttcaagcttggaagcttctagaagacctaaccaatcattttgatctggtttta 81
|||||| ||||||| |||||| |||| ||||| | | |||||| |||||| || ||
Sbjct: 313 aatggttttcaagcatggaagattctggaagatatgaataatcatactgatcttgtccta 372
Query: 82 actgaggttgtcatgccttgtgtatcaggcattggccttttatgtaagattatgaaccac 141
|| ||||| ||||||||| |||| || ||||| |||||||| ||||||| ||||||
Sbjct: 373 acagaggtagtcatgcctatcttatctggaattggtcttttatgcaagattagaaaccac 432
Query: 142 aaaacctgcaagaatattcctgtgattatgatgtcatctcatgattccatgaacatagtc 201
||||| || ||||||||| ||||| |||||||| || |||||||| ||| ||||||
Sbjct: 433 aaaactctcaggaatattccagtgataatgatgtcgtcccatgattctatgggtatagtc 492
Query: 202 tttaaatgtttatcaaagggtgcacttgactttttagtgaagcctattcgaaagaatgag 261
||||| ||| | ||||| |||||| |||| ||||||||||| |||||||||||||||||
Sbjct: 493 tttaagtgtctgtcaaaaggtgcagttgattttttagtgaaacctattcgaaagaatgaa 552
Query: 262 cttaaaaacctctggcaacatgtttggaggaaatgccacagctctagtggaagtggaagt 321
|| |||||||| ||||| ||||||||||||| ||||||||| |||||||| ||||| |||
Sbjct: 553 ctaaaaaacctatggcagcatgtttggaggagatgccacagttctagtggtagtgggagt 612
Query: 322 g 322
|
Sbjct: 613 g 613