Jatropha Genome Database

JcCA0152031.30
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152031.30 + phase: 0 
         (567 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013709 conserved hypothetical protein                          230   7e-60

>30170.m013709 conserved hypothetical protein
          Length = 546

 Score =  230 bits (116), Expect = 7e-60
 Identities = 406/502 (80%), Gaps = 3/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 55  atggataaatgggatcatcttcaatctcgcttgctttcgcaatttataaatgcttcttcc 114
           ||||| ||||||||| || ||||||| || ||  |||| ||||||| ||| |||||||| 
Sbjct: 1   atggagaaatgggataattttcaatcccgtttagtttctcaatttagaaacgcttcttca 60

                                                                       
Query: 115 ataataagtagattacaggtgattcgagattctaacaattatggaaatttgagtggtgtg 174
           || ||    || |||||| ||||  |||| ||||||||||| || |  |||| | |||| 
Sbjct: 61  attatcgacaggttacagatgatcagagagtctaacaattacgggagcttgaattgtgtt 120

                                                                       
Query: 175 gatggcatagtggatgcagtgttgagaaagcaaatggattccttagaaactattttgctt 234
           |  |||||||  ||||  ||| |||||||||||||||| || ||| | || || ||| ||
Sbjct: 121 gggggcatagcagatgttgtgatgagaaagcaaatggagtctttacagaccatattgatt 180

                                                                       
Query: 235 tctatgaataagacactggaagactttcgtagtattgttttatttcttgagaagatgtac 294
           || || |||||||||||||| || ||||   |||||||| |  ||||||||| |||| | 
Sbjct: 181 tccataaataagacactggacgagtttcagggtattgttatgattcttgagaggatgcat 240

                                                                       
Query: 295 aaagatggcaggcagttagttaaa---ggaggtcctaatcagctgactaccaaacaattg 351
           |  ||||| | |||||||||| ||   || ||| ||||||| |||||| | |||||||| 
Sbjct: 241 agggatggtaagcagttagttcaagggggtggttctaatcatctgactgcaaaacaatta 300

                                                                       
Query: 352 cagcaacgagttggtgttaagccatgtctggccgattgcttggatgggcttatgattctt 411
           ||||||||||||||| | ||||| ||||| || ||||||||||| || ||||||||||||
Sbjct: 301 cagcaacgagttggtatcaagccgtgtctcgctgattgcttggacggacttatgattctt 360

                                                                       
Query: 412 cacgatatgcatcgctccgagtatcttcttaagtcatctttggtttcagctcttctggca 471
           |  |||||||||||||| |||||||||||||| |||||| |||||||||| |||| ||| 
Sbjct: 361 cgtgatatgcatcgctcagagtatcttcttaaatcatctctggtttcagcacttccggcg 420

                                                                       
Query: 472 cttaccttgaagcctagttccggcgatctagctgccctccagcaactcatggttgatcaa 531
           ||   ||||||||| |||||  | ||||||||||| |||||||||||| |||| ||||| 
Sbjct: 421 ctcgtcttgaagcccagttcaagtgatctagctgcactccagcaactcttggtagatcag 480

                                 
Query: 532 cctaatatccccaaagaggaag 553
           ||||||||||||| ||||||||
Sbjct: 481 cctaatatccccagagaggaag 502