Jatropha Genome Database

JcCA0152031.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152031.20 - phase: 0 
         (690 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013793 conserved hypothetical protein                          161   7e-39

>30170.m013793 conserved hypothetical protein
          Length = 639

 Score =  161 bits (81), Expect = 7e-39
 Identities = 165/193 (85%)
 Strand = Plus / Plus

                                                                       
Query: 443 cccaggtttctgaagagataacatctccgaagcaagctgcgctaaaggtcgatgaccaag 502
           ||||| |||| ||||||  ||| ||||| ||||||||| ||   ||||  |||||| |||
Sbjct: 398 cccagctttcggaagaggaaacctctccaaagcaagcttcgagtaaggctgatgacaaag 457

                                                                       
Query: 503 ttcaaaaggagcgatcaagatctctatctgtatttggtactcttgtttccccaaagcttc 562
           |||||||||| ||||||||||| |||||||| ||||| ||| | ||||| ||||||||||
Sbjct: 458 ttcaaaaggaacgatcaagatcactatctgtgtttggaactttagtttcaccaaagcttc 517

                                                                       
Query: 563 gagatgcccagctatcatttgagacagcactggagacaattgtagaaatagcaaacatgc 622
           ||| ||| || ||||||||||| ||||| ||||||||  |||||||||||||||||||||
Sbjct: 518 gagctgctcaactatcatttgaaacagctctggagacggttgtagaaatagcaaacatgc 577

                        
Query: 623 gttcagaaatgct 635
           |||||| ||||||
Sbjct: 578 gttcagcaatgct 590



 Score = 95.6 bits (48), Expect = 3e-19
 Identities = 147/180 (81%)
 Strand = Plus / Plus

                                                                       
Query: 115 gataatgttttgcgatttctggattcgatggatagttatttgactcttttcgattcttta 174
           ||||| ||||||| |||| |||||||| | || ||||| |||||||| || |||||||||
Sbjct: 106 gataacgttttgcaatttttggattcggtagacagttacttgactctatttgattcttta 165

                                                                       
Query: 175 tctcatacacttcgtcagggttggctggagttggctggtgctcggcattcaatgggggct 234
           |||  ||| ||||| ||||| |||||||| |||||  ||||| | |||||||||||||||
Sbjct: 166 tcttctactcttcgccagggatggctggaattggcaagtgctagacattcaatgggggct 225

                                                                       
Query: 235 tcacgcatcaatagcgctttactggaccttaaagtccactctgcttctactttattgcaa 294
           | |||| | |||||| | ||  | |||||||||  |||  |||||||||| | |||||||
Sbjct: 226 ttacgccttaatagctcattgttagaccttaaatcccatcctgcttctacatcattgcaa 285