Jatropha Genome Database
- JcCA0150751.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0150751.10 - phase: 0
(660 letters)
Database: castor_wgs_0.1_cds
31,221 sequences; 31,347,911 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29680.m001664 synovial sarcoma associated ss18 protein, putative 626 e-179
>29680.m001664 synovial sarcoma associated ss18 protein, putative
Length = 660
Score = 626 bits (316), Expect = e-179
Identities = 569/651 (87%), Gaps = 8/651 (1%)
Strand = Plus / Plus
Query: 1 atgcagcagcacctgatgcagatgcagcccatgatggcagcctattatcccaacaacgtg 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcagcagcacctgatgcagatgcagcccatgatggcagcctattatcccaacaacgtc 60
Query: 61 actactgatcatattcaacagtatctggatgaaaacaagtcattgattttgaagattgtg 120
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct: 61 actactgatcatattcaacagtatttggatgaaaacaaatcattgattttgaagattgtc 120
Query: 121 gagagccagaattcaggaaaacttagcgagtgtgcagagaaccaagcaaggctacagaga 180
||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||||||
Sbjct: 121 gagagccagaattcagggaaaatcagcgagtgtgcagagaaccaggcaaggctacagaga 180
Query: 181 aatctcatgtatttggctgcaattgcggattctcaacctcaaccacctaccatgcatacc 240
|| |||||||| |||||||||| || ||||||||||| ||||| |||| ||||||| ||
Sbjct: 181 aacctcatgtacctggctgcaatcgctgattctcaaccccaacctcctaacatgcattcc 240
Query: 241 cagttcccttctagcggcattatgcatccaggagcgcactacatgcagcaccagcaagct 300
||||| |||| || || |||||||| |||||||| ||||||||||||||||| ||||||
Sbjct: 241 cagttttcttccagtgggattatgcagccaggagcacactacatgcagcaccaacaagct 300
Query: 301 caacaaatgacaccacaatctcttatggctgcacgatcatccatgctgtatactcaacaa 360
||||| |||||||||||||| | ||||| ||| |||| |||||| |||| ||||||||
Sbjct: 301 caacagatgacaccacaatccgtaatggcggcaagatcctccatgttgtacactcaacag 360
Query: 361 cagtttgcagctctgcaacaacaagca-gccttacacagccagcttggcatgagctctgg 419
|||| |||||| ||||| |||| |||| ||||| |||||||||||||| |||||||||||
Sbjct: 361 cagtatgcagcactgcagcaac-agcaggccttgcacagccagcttgggatgagctctgg 419
Query: 420 tggaagccaaggacttcacatgctgcaaaatgaggctagcgctgcaggaggcagcggagg 479
||||| | ||| |||||||||||||||| |||||| ||| |||| ||||||||||||||
Sbjct: 420 cggaagtccaggtcttcacatgctgcaaagtgaggcaagcactgctggaggcagcggagg 479
Query: 480 acttggagcagcagggtttcctgattttggtcgtgatgctggtggcagaggaatg----- 534
||||| |||| |||||||||||||||||| || |||||| ||||||||||||||
Sbjct: 480 gcttggggcaggagggtttcctgattttggccgcgatgctagtggcagaggaatggctgg 539
Query: 535 -ggaagcaaacaagatattggtagtgcaggttctgctgagggacgaggtggcagctctgg 593
|||||||| |||||||| || | |||||| |||| ||| || ||||| |||| ||||||
Sbjct: 540 cggaagcaagcaagatatggggaatgcaggatctggtgaagggcgaggaggcaactctgg 599
Query: 594 aggtggggtcagcgatggaggtgaaacgctctacttaaaatcggctgatga 644
||| || ||| |||||||| |||| || ||||||||||| ||||||||
Sbjct: 600 aggccagggcagtgatggaggcgaaaatctttacttaaaatcagctgatga 650