Jatropha Genome Database

JcCA0149501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0149501.20 - phase: 0 /partial
         (318 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29578.m000201 conserved hypothetical protein                          250   4e-66

>29578.m000201 conserved hypothetical protein
          Length = 1266

 Score =  250 bits (126), Expect = 4e-66
 Identities = 237/274 (86%)
 Strand = Plus / Plus

                                                                        
Query: 41   aggaaagcatcatgcctgaagataaaaagaccaagttcctggaatccgaagattcggagt 100
            |||||||||| |||||||||||||||||||| ||||||||  |||| |||||||||||||
Sbjct: 986  aggaaagcataatgcctgaagataaaaagacaaagttccttcaatcagaagattcggagt 1045

                                                                        
Query: 101  ttgaaaaagttatagacttctacttatgttctcagagtgatgtgttcgtaccagccatat 160
            ||||||| || || || || ||| | |||||||| || ||||| || |||||||||||||
Sbjct: 1046 ttgaaaaggtaattgatttttacatgtgttctcaaagcgatgtctttgtaccagccatat 1105

                                                                        
Query: 161  ctggcctattctatgccaatgtagctggtaagagaatagcttctggtaagacacaaattc 220
            ||||||| || ||||| |||||||||||||||||||||||| |||||||||| ||||| |
Sbjct: 1106 ctggcctcttttatgcaaatgtagctggtaagagaatagctgctggtaagacgcaaatac 1165

                                                                        
Query: 221  ttgttccagccaacattccgggaacctctgcgtcggtcaccaatcatttctccccatata 280
            ||||||||||  |||| || ||| | || || || |||||||||||||| ||||| || |
Sbjct: 1166 ttgttccagctgacatcccaggatcttccgcctctgtcaccaatcatttttccccctaca 1225

                                              
Query: 281  tctcaaagaagaaccacttggcctattcatgttt 314
            | || ||||||||||||||||||||||| |||||
Sbjct: 1226 tatccaagaagaaccacttggcctattcgtgttt 1259