Jatropha Genome Database

JcCA0149441.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0149441.10 - phase: 0 /pseudo/partial
         (945 letters)

Database: castor_wgs_0.1_cds 
           31,221 sequences; 31,347,911 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014112 DNA binding protein, putative                           182   3e-45

>30147.m014112 DNA binding protein, putative
          Length = 945

 Score =  182 bits (92), Expect = 3e-45
 Identities = 278/340 (81%)
 Strand = Plus / Plus

                                                                       
Query: 354 taaagggaaagtaccaaaaggaattcacaaggctgagagggaaaaactgaagcgcgagca 413
           |||||||||||| || ||| |||| |||||||||||| | || ||||||||||| |||||
Sbjct: 351 taaagggaaagttcccaaaagaatacacaaggctgagcgagagaaactgaagcgtgagca 410

                                                                       
Query: 414 attgaatgagctcttcttggagctagccagtgctcttgaactgactcagccaaataatgg 473
           ||||||||| |||||  | || ||||||  |||||||||  |||||||||||||||||||
Sbjct: 411 attgaatgacctctttcttgacctagccgatgctcttgatttgactcagccaaataatgg 470

                                                                       
Query: 474 aaaggcctcaattttgtctgaagcgactaaattgttgaaggattttcttgtccagattga 533
            ||||| || || ||||  |||||  ||| | |||||||||| ||  |||  ||||||||
Sbjct: 471 gaaggcttctatattgtgcgaagctgctagactgttgaaggacttgtttggacagattga 530

                                                                       
Query: 534 gtgcctcaaaaaggagaatgcatctctgttatctgaatctcactatgtaactacagagaa 593
           ||||||||| |||||||||| |||| ||||||||||||||| |||||||||    || ||
Sbjct: 531 gtgcctcaagaaggagaatgaatctttgttatctgaatctcgctatgtaaccgtggaaaa 590

                                                                       
Query: 594 gaatgagctgaaagaagaaaactcagtactacaaactcagattgaaggacttcaaagtga 653
           |||||||||||  |||||||||   |  ||  |||||||||| ||    || ||| ||||
Sbjct: 591 gaatgagctgagggaagaaaacctggccctggaaactcagatcgagtctctgcaaggtga 650

                                                   
Query: 654 gctggaagcaaggatggtccaatcaaaacctgatctgaat 693
           ||||||||||| |   ||||||||||||||||| ||||||
Sbjct: 651 gctggaagcaaaggcagtccaatcaaaacctgacctgaat 690